Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0159 ATGATGAGGTTGAAGACATATGCTGGTCTTAGTTTGATGGCAACTTTGGCTATTGCATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCAACTTCCAAGATCAGTTTGGTGCTTCTTCTTAACATGGGTTTGGTTATTATGTGTGTTCTGTGGCAACTAACTAAAAAGGTATTCTTGGGTAATCTTCGAGAGGCTGAGGTTGAGAGGCTTAATGAGCAATCATGGAGGGAGGTTATGGAGATCCTCTTTGCGATTACTATTTTTAGGCAGGATTTCTCGGTTACATTCCTTGCGATGGTCACGGCATTGTTGTTAATTAAGGCTTTGCATTGGTTGGCTCAAAAGAGAGTCGAGTACATCGAGACCACTCCTACAGTGACCACATTATCCCATATTCGAATTGTATCTTTTATGGGTTTCCTTCTTCTTCTTGATAGCATTTTCTTATACAGCTCTTTGAAGCATTTGATACAAACATGGCAGGCTTCCGTTTCACTATTCTTTGCTTTCGAGTACATGATATTAGCAACAACAACAGTATCGATTTTTGTAAAATATGTTTTCTATGTCACTGACATACTTATGGAGGGACAGTGGGATAAGAAACCAGTCTTCACATTTTACCTGGACCTTGTTAGGGACTTGCTGCACTTGTCCATGTATCTGTGCTTCTTCTTTGTTATTTTTGTAAACTATGGAATTCCCTTGCACCTAATACGGGAGCTATACGAGACATTTAGGAACTTCAAAGCTCGCATTGCAGATTACATTAGATATCGTAAGATCACTTCAAATATGAATGATCGCTTTCCAGAAGCAACCTCCGAAGAGCTCAATGCTAGTGATGCAACTTGTATTATCTGTCGTGAAGAGATGACTGCAGCCAAGAAACTGATATGCGGACATCTTTTTCATGTTCATTGCCTTCGATCATGGCTAGAGCGACAACACACTTGCCCTACTTGCAGAGCCTTGGTTGTACCCCCAGAAAATGGAACAACTGTTGCTGGAGGTCAGCAAGGATCACAATCAGATGGTCATCAACAGGGCACTGGAAGTACAGGTCAAACCGAGCTTGGTAATGGGGTGGCAACTGATAGTTTGAGTCGGCATCAAGCTAGACTCCAAGCAGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCTCCCGCAACTTCTTTTGTACGATCTCCTGGGTACACTAATTATCCCCCGGTTGCTGCTGAATCTACCAGTGTTGATCTTAATGGAGAACAAGCTTCCAGTCAACAAGCACAAAATCAGTTTCATATCCCTGGTGGGCCAATAAATGCACCCTTTCCTTCAACAGGACATTTCCATTATCTTCCTTCCCAACCATACATGGCCCCTTTGAATTATGGAGAGGGGTTTGAAAATGATCCAAATATCTCAAAATCTCAGCTGGAAGCTCATAAAAAAATTCTACAACAACAGATTGAGATTCTGCAAAATCAGCTACAGAATCTGCAGAGCACAGAGGCTAAGAGAAGTGTAGATGACGGCGCACCATCATCAGAAAGCAAAGGCAAGCTTAGCTCTTCCTCGGAGATTCAAGATGGAAAAGCATAA 1620 0.4185 MMRLKTYAGLSLMATLAIAYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQLTKKVFLGNLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLAQKRVEYIETTPTVTTLSHIRIVSFMGFLLLLDSIFLYSSLKHLIQTWQASVSLFFAFEYMILATTTVSIFVKYVFYVTDILMEGQWDKKPVFTFYLDLVRDLLHLSMYLCFFFVIFVNYGIPLHLIRELYETFRNFKARIADYIRYRKITSNMNDRFPEATSEELNASDATCIICREEMTAAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGHQQGTGSTGQTELGNGVATDSLSRHQARLQAAAAAASIYEKSYVYPPATSFVRSPGYTNYPPVAAESTSVDLNGEQASSQQAQNQFHIPGGPINAPFPSTGHFHYLPSQPYMAPLNYGEGFENDPNISKSQLEAHKKILQQQIEILQNQLQNLQSTEAKRSVDDGAPSSESKGKLSSSSEIQDGKA* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0159 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 337 IPR013083 -
Mtr5g0159 539 PANTHER RING ZINC FINGER PROTEIN 1 454 - -
Mtr5g0159 539 SMART ring_2 292 329 IPR001841 -
Mtr5g0159 539 MobiDBLite consensus disorder prediction 340 375 - -
Mtr5g0159 539 MobiDBLite consensus disorder prediction 509 539 - -
Mtr5g0159 539 Pfam Ring finger domain 291 330 IPR001841 -
Mtr5g0159 539 Coils Coil 482 512 - -
Mtr5g0159 539 CDD RING-H2_synoviolin 289 330 - -
Mtr5g0159 539 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
Mtr5g0159 539 SUPERFAMILY RING/U-box 272 336 - -
Mtr5g0159 539 MobiDBLite consensus disorder prediction 523 539 - -
Mtr5g0159 539 PANTHER - 1 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0159 Mtr-Chr5 1483996 1488790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0159 1 527 C3H Transcription Factor Family AT3G16090 65.537 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0159 K10601 - gmx:100816441 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0159 5 1483996 1488790 Mtr5g0159 5 1483996 1488790 ECH