Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0156 ATGAATCATTTTGATAAAGGTGAAATTCCAATTCTGTCAGAAAGTACATGTGCACAACGATCTAATGAACCTCAGGATTCTACCTTCCGAAGAAACATATCAAGCACACCAAGTGCTTCAATATCGAATCTTGTCGGACATACTGGTCCGCTTCATACCGCGAGGAAAACTCCTGTTTACCGAATGAGTGGTCCACTGTATGCTACTCCTGCAACTGGGAATCCTTTTCAGAATAGTATAATAGTGGCAGGAAACAAAGTAGGGGAGAACAACATAGAAAAGTTATCTACATTTGATGGCACGGATAAAAATGAACACTTGTTGAGGTCTGGACAACTAGGAATGTGTAATGATCCTTATTGTACTACTTGCCCTACTTCCTTCAAAGTTGCTCACCAAAAAAAACCAAGAGCTTCCACTATATTTGATCCCAAGTTCCACAATTCTCTTTATGGCGACGCCAAAGGTTATGGACGAAAAGTTTATTCTTTCTGCTCTTCATGTATTCCTGGAGTGATGAACCCTCACACAAAAATTGTACAGCAATGGAACAAGTTTTTGGCCATATTTTGCCTGCTCGCAATTTTTGTTGATCCCTTATTTTTCTTCTTACTTTATGATAATAAATGTATTCAAATCAACTGGACAATGGCAACAACACTTGTTTTACTTAGAAGCATATTTGATGTTGTGTATCTCCTGAACATTCTTCTTCAGTTTAGGTTGGCTTATGTTTCTCCTGAGTCAAGGGTTGTTGGTGCTGGGGATTTAGTCGACCATCCCAAGAAAATAGCTGTTAATTACTTTAAGAGCTACTTTTTCTTGGACTTATTTGTTGTATCACCTATTCCTCAGATAATGATAATGTTTATCCTACCAAATTCCTTGGGGTCATCAGGAGCAAATTATGCAAAAAATCTTCTACGACTAGGGATCCTTGTACAATATATTCCAAGATTATTCAGATTTTTGCCTCTGCTAATTGGTCAGTCTCCAACCGGATTCATATTCGAATCAGCCTGGGCAAATTTCATTATTAATCTTCTCATTTTTATGCTATCCGGCCATGTTGTTGGTTCATGCTGGTACCTCTTTGGCTTACAGAGGGTTAACCAATGTTTGCGTGATGCCTGCCGTAATGCTAATCTAACTGGATGCATGGAATTGATTGATTGTAATTCTAATGCTACATGGAGGAATGATAAGGGTGCCAATGATTGTTTGAATTCCTCATCTGGTGTTTTTTCTTATGGAATCTATGCCAATGCTGTACCACTTACGATAGAAACTAGGGTGATCAGCAAATATGTGTATGCACTGTTTTGGGGATTCCAGCAAATCAGTACTATGGCTGGTAATCAAGTACCAAGCTATTTTGTGTGGGAAGTTCTCTTTACAATGTCCATCATAGGATTGGGACTCTTGCTTTATGCGCTTCTCATTGGAAACATACAGAACTTTCTTCAGGCTCTTGGACGGAGGAGGGTAGAAATGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAGTCATCGCCGCTTACCAGAAGATCTTAAGAGGAGAGTACGGGAGGCTGAACGGTATACTTGGGCTGCAACAAGGGGCGTTCCTGAGGAAATGGCTCTAGAAAATTTGCCAGAAGATCTCCAGAAAGACATTAGACGCCATCTCTTCAAATTTGTAAAAAAAGTTCGAATATTTTCCATGATGGACGAGGATGAACCTATCTTAGATGCCATTCGTGAGAGACTAATACAGACGACATACATTAAAGGAAGTAGAATTCTGAGTCAGGGTGGTCTCGTACAAAAGATGGTGTTTATTGTGCGTGGAAAGTTGGAGAGCATCGGAGAAGATGGAATTCCGGTTCCATTATCAGAAGGGGATGCTTGTGGTGAAGAACTTCTAAGATGGTATCTTGAACAGTCTGTTGAAAGCAAAGAAGGTAAAAAAGTAAAGCTTCAAGGACAAGGATTGACTAGTGACAGAACAGTAAGATGCTTAACCAATGTTGAGGCATTTTCACTCCGCGCTAAAGACATTGAAGAAGTGACCACTCTTTTCGCAAGATTCTTGCGGAGCCCTCGTGTTCAAGGAGTTATAAGGTATGAATCCACATATTGGAGATCACTTGCAGCAAACAGAATTCGGGTTGCATGGAGATACAGGAAGAAGCGTCTAAGTCGAGCTAATACCAGACAAAATGATTATCAAACATTGATGTCATAG 2229 0.4002 MNHFDKGEIPILSESTCAQRSNEPQDSTFRRNISSTPSASISNLVGHTGPLHTARKTPVYRMSGPLYATPATGNPFQNSIIVAGNKVGENNIEKLSTFDGTDKNEHLLRSGQLGMCNDPYCTTCPTSFKVAHQKKPRASTIFDPKFHNSLYGDAKGYGRKVYSFCSSCIPGVMNPHTKIVQQWNKFLAIFCLLAIFVDPLFFFLLYDNKCIQINWTMATTLVLLRSIFDVVYLLNILLQFRLAYVSPESRVVGAGDLVDHPKKIAVNYFKSYFFLDLFVVSPIPQIMIMFILPNSLGSSGANYAKNLLRLGILVQYIPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSCWYLFGLQRVNQCLRDACRNANLTGCMELIDCNSNATWRNDKGANDCLNSSSGVFSYGIYANAVPLTIETRVISKYVYALFWGFQQISTMAGNQVPSYFVWEVLFTMSIIGLGLLLYALLIGNIQNFLQALGRRRVEMQLRGRDVEQWMSHRRLPEDLKRRVREAERYTWAATRGVPEEMALENLPEDLQKDIRRHLFKFVKKVRIFSMMDEDEPILDAIRERLIQTTYIKGSRILSQGGLVQKMVFIVRGKLESIGEDGIPVPLSEGDACGEELLRWYLEQSVESKEGKKVKLQGQGLTSDRTVRCLTNVEAFSLRAKDIEEVTTLFARFLRSPRVQGVIRYESTYWRSLAANRIRVAWRYRKKRLSRANTRQNDYQTLMS* 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0156 742 ProSiteProfiles cAMP/cGMP binding motif profile. 576 636 IPR000595 -
Mtr5g0156 742 Gene3D - 183 491 - -
Mtr5g0156 742 Gene3D Jelly Rolls 564 690 IPR014710 -
Mtr5g0156 742 Pfam Ion transport protein 183 493 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr5g0156 742 CDD CAP_ED 566 684 IPR000595 -
Mtr5g0156 742 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 733 - -
Mtr5g0156 742 Gene3D Helix hairpin bin 493 558 - -
Mtr5g0156 742 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 733 - -
Mtr5g0156 742 SUPERFAMILY cAMP-binding domain-like 494 687 IPR018490 -
Mtr5g0156 742 SUPERFAMILY Voltage-gated potassium channels 175 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0156 Mtr-Chr5 1448457 1454183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0156 2 643 Ion Channels AT3G17700 59.016 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0156 K05391 - ccaj:109789004 1097.8