Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0155 ATGGAGGCTCTTGATTCTGTCGATGACCTATGGGGTTTCTTATCTGACATTGGTGAGGATGATTATGACAAATCTAGGAAAGCCTTTCCTTCAGTGGACCTGGATGATACCAACCATTCATTTTCTGAGTTTGCAGTAGAGGATCTTGAATGGCTATCCAACAAAGATGCGTTTCCAGCTGTTGAAACATTTGTTGACTTTTCCTGTATTCAACCAGATATTTCGCAGAATCAAAAGATAGCACCAATTGTCGAGAACAGCACAAGCAGTAGCAACAGCAATAACAGTTCCAACAGCATTACACTCTTAAGTGGCTACAATCACGTAAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTAGTAAGCCTCGCCTTGGCATTTCTGATACCTGGAACCATCAATTCGCGTGGAAACAACCTAATAACAAAACTTCCAAAGAACAAGAATCGAAGAAAACCTCAACCATTGGGAGGAAATGTCATCATTGTGGAGCTGATAATACTCCGCAATGGCGTGTAGGTCCAGATGGTCCAAAAACACTTTGTAATGCATGTGGGGTTAGGTATAGGTCTGGCCGACTTGTACCTGAATACCGCCCTGCAAATAGCCCAACTTTTTGCAGCAACGTGCATTCTAATTCCCACAGAAAAGTAGTGGAAATAAGGAAGCAGAAGAGAATAAGAATAGGATGA 693 0.4286 MEALDSVDDLWGFLSDIGEDDYDKSRKAFPSVDLDDTNHSFSEFAVEDLEWLSNKDAFPAVETFVDFSCIQPDISQNQKIAPIVENSTSSSNSNNSSNSITLLSGYNHVKFPVRARSKSRSKPRLGISDTWNHQFAWKQPNNKTSKEQESKKTSTIGRKCHHCGADNTPQWRVGPDGPKTLCNACGVRYRSGRLVPEYRPANSPTFCSNVHSNSHRKVVEIRKQKRIRIG* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0155 230 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
Mtr5g0155 230 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 156 217 - -
Mtr5g0155 230 PANTHER GATA TRANSCRIPTION FACTOR 7 226 - -
Mtr5g0155 230 CDD ZnF_GATA 159 216 IPR000679 GO:0006355|GO:0043565
Mtr5g0155 230 PANTHER GATA TRANSCRIPTION FACTOR 1 7 226 - -
Mtr5g0155 230 Gene3D - 153 205 IPR013088 GO:0006355|GO:0008270
Mtr5g0155 230 ProSiteProfiles GATA-type zinc finger domain profile. 154 190 IPR000679 GO:0006355|GO:0043565
Mtr5g0155 230 SMART GATA_3 154 204 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0155 Mtr-Chr5 1437147 1438592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0155 47 224 C2C2-Gata Transcription Factor Family AT3G24050 43.204 1.43e-45 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mtr5g0155 GATA 3.1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0155 - - mtr:MTR_5g007600 414.075