LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g0154	ATGGCAACAATACCATATATGGATATTCTGAGTTATATACTTATCTTCTTGTTAATATTCATTGTTACACAAGTTTTTTACTCATTATTTGCAACCAAAATGAGAAACAAAACTAACTCAAAACTTCCACCAGGACCTTTCCCTCTTCCCATAGTTGGAAATCTCTTTGTAATGAACAACAAACCACATAAATCATTAGCCAAACTTGCCAAAATTTATGGTCCAATATTAACTTTAAAGCTAGGTCAAGTAACAACCATAGTTATCTCTTCGCCCGACATGGCCAAAGAGATACTCCAAACACATGATTCTTTACTTTCAGACCGAACTGTACCACATGCTTTAACCGCTTTCAATCACGACCAATTTGGCGTGGGATTCCTTTCTCTTTCGCCTCTTTGGCGAGAGATGCGAAGGGTATGCAAAAATCAACTATTCTCTAATAAGAGTCTTGATGCAAGCCAATATCTCAGGCGTGGGAAGATAGATGAACTCATCAATTATGTTTCTCAATGCAGCCTAAAGGGTGAAGCAATAGATATGGGAAAATTAGCTTTTAAGACTTCAATTAATTTGTTGTCTAATACTGTTTTCTCTGTAGACTTTGCTAATAACAAGGATTTGGTTATGGATATGTCGGAGACGGTTGGATCTCCAAACATGGCTGATTTTTTTCCATTGTTGAGGTTGATTGATCCACAAGGCATCAAAAGGACCTATGTGTTTTATGTAGGAAAGTTGTTTGGTATCTTTGACAACATAATCGATCAAAAGTTGAAATTGCGAGAAGGGGATGGTTTTGTCGCCAACAACGATATGTTAGACTCGTTGCTCGCTGAAGAAAACAAAAAGGAGTTGGACAGAGAAAAAATTCAACATTTACTACATGATCTACTTGTTGGGGGAACTGATACAACTACATATACATTAGAATGGGCAATGGCTGAACTACTTCACAACCCAAATATAATGTCAAAGGTTAAAAAAGAACTTGAAGATACCATTGGAATAGGAAACCCGATCGAGGAATCAGACGTTGCTAGACTCCCTTACTTACAAGCGATAATAAAGGAAACCTTACGCTTGCACCCGATAGCTCCACTTTTGCTCCCTCGAAAAGCAAAGGAAGACGTAGAAGTCAATGGCTACCTCATTCCAAAAGGTGCACAAATTTTCGTTAATGTGTGGGCTATTGGTAGAGATCCAAAAGTATGGGACAATCCAAATTTATTTTCGCCAAAGAGGTTTTTAGGAACAAAGCTTGATATCAAGGGACAAAATTTTCAGCTCACGCCGTTTGGCAGTGGAAGGCGAATATGTCCCGGCTTGCCTTTGGCTATGAGGATGTTGCACATGATGTTGGGATCATTACTAATTTCTTTTGATTGGAAGCTAGAAAATGATATGAAACCTGAAGAAATAGACATGGAAGATGCAATACAAGGACTTGCCTTGAGAAAATGTGAATCCTTGAGAGTTATTCCAACCAAAATCAGTAATTAA	1503	0.3792	MATIPYMDILSYILIFLLIFIVTQVFYSLFATKMRNKTNSKLPPGPFPLPIVGNLFVMNNKPHKSLAKLAKIYGPILTLKLGQVTTIVISSPDMAKEILQTHDSLLSDRTVPHALTAFNHDQFGVGFLSLSPLWREMRRVCKNQLFSNKSLDASQYLRRGKIDELINYVSQCSLKGEAIDMGKLAFKTSINLLSNTVFSVDFANNKDLVMDMSETVGSPNMADFFPLLRLIDPQGIKRTYVFYVGKLFGIFDNIIDQKLKLREGDGFVANNDMLDSLLAEENKKELDREKIQHLLHDLLVGGTDTTTYTLEWAMAELLHNPNIMSKVKKELEDTIGIGNPIEESDVARLPYLQAIIKETLRLHPIAPLLLPRKAKEDVEVNGYLIPKGAQIFVNVWAIGRDPKVWDNPNLFSPKRFLGTKLDIKGQNFQLTPFGSGRRICPGLPLAMRMLHMMLGSLLISFDWKLENDMKPEEIDMEDAIQGLALRKCESLRVIPTKISN*	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g0154	500	PANTHER	CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED	7	499	-	-
	Mtr5g0154	500	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	433	442	IPR017972	GO:0005506\|GO:0016705
	Mtr5g0154	500	SUPERFAMILY	Cytochrome P450	37	496	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	Pfam	Cytochrome P450	43	478	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	P450 superfamily signature	301	318	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	P450 superfamily signature	354	365	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	P450 superfamily signature	431	440	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	P450 superfamily signature	440	451	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	E-class P450 group I signature	70	89	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	E-class P450 group I signature	188	206	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	E-class P450 group I signature	290	307	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	E-class P450 group I signature	310	336	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	E-class P450 group I signature	353	371	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	E-class P450 group I signature	394	418	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	E-class P450 group I signature	430	440	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PRINTS	E-class P450 group I signature	440	463	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	Gene3D	Cytochrome P450	28	493	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mtr5g0154	500	PANTHER	CYTOCHROME P450 FAMILY PROTEIN	7	499	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g0154	Mtr-Chr5	1420133	1422117	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g0154	7	497	Cytochrome P450	AT2G45550	43.615	6.18e-157	454

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g0154	-		-	gmx:100792017	576.244

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr1g3576	1	47500817	47503854	Mtr5g0154	5	1420133	1422117	ECH
	Mtr5g0154	5	1420133	1422117	Mtr5g0154	5	1420133	1422117	ECH