Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0144 ATGATGAGAACACCAAGCAATGATGAAAGTGGTTTGAAGAAGGGTCCATGGAGTCCAGAAGAAGATAAAATATTAGTGGATCACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTTCCAAAGCTTGCAGGATTGAATAGATGTGGAAAGAGTTGTAGACTTAGATGGAATAATTATCTAAGGCCTGATATTAGAAGAGGAAAATTCTCTGATGAAGAAGAAAATCTCATCATCAATTTACATTCAGTTCTTGGAAATAAGTGGGCAGCTATAGCAACACATCTTCCAGGAAGGACAGATAATGAGATAAAGAATTTTTGGAACACACATTTAAAGAAAAAGCTAATGCAAATGGGGTTAGATCCAGTGACACACAGGCCAAGAACAGATCACCTAGACCTTCTTAGTAATCTACAGCAAATAATATTGAATGCTGCAAACATTGTCACAAGTTGTGACATAAACAATAATGCTCTAAGGCTACAATATTCATTGCTACCACAAAGTTTGGTAAATGATGTTTTAGGATTTAATAATAACATACAAAGTTTTTATGATGGTTCCAATATTGGTATTTCTTCTCAAACAATTCAACCTAATTTGCAAAACTTTGAAGCCCCTCTTCAGCAATTACTACCACAAGAATTTGAGTGCTCTCAGAAATTTGGTGAACAAATTGGTAACACAAATTTTGCTTCAACAGTATTATCAAATTCTCTTCCAAAGTTGGTTTCAGTTTCACCTCAACGTTCAGGAACGGTTAAGGTAGGAGAAGAAAACATGATGATAAATGCAAAAGAGTGTTGTAACACTTCTTCCTCCAACAGCTTTGAAACTTGGGGAGATTTCATAAATGATGATGCAAATGATGCTTATTGGAAAGATTTCATAGAACAACAATATTCAAGCCAACCATAG 921 0.3529 MMRTPSNDESGLKKGPWSPEEDKILVDHIQKHGHGSWRALPKLAGLNRCGKSCRLRWNNYLRPDIRRGKFSDEEENLIINLHSVLGNKWAAIATHLPGRTDNEIKNFWNTHLKKKLMQMGLDPVTHRPRTDHLDLLSNLQQIILNAANIVTSCDINNNALRLQYSLLPQSLVNDVLGFNNNIQSFYDGSNIGISSQTIQPNLQNFEAPLQQLLPQEFECSQKFGEQIGNTNFASTVLSNSLPKLVSVSPQRSGTVKVGEENMMINAKECCNTSSSNSFETWGDFINDDANDAYWKDFIEQQYSSQP* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0144 306 CDD SANT 69 112 IPR001005 -
Mtr5g0144 306 CDD SANT 16 61 IPR001005 -
Mtr5g0144 306 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr5g0144 306 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr5g0144 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 301 - -
Mtr5g0144 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr5g0144 306 SMART sant 66 114 IPR001005 -
Mtr5g0144 306 SMART sant 13 63 IPR001005 -
Mtr5g0144 306 Gene3D - 11 67 - -
Mtr5g0144 306 Gene3D - 69 116 - -
Mtr5g0144 306 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr5g0144 306 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr5g0144 306 PANTHER MYB TRANSCRIPTION FACTOR 2 301 - -
Mtr5g0144 306 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr5g0144 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0144 Mtr-Chr5 1330605 1333540 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0144 1 299 MYB Transcription Factor Family AT5G16770 49.850 3.22e-94 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g0144 Myb_DNA-binding 6.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0144 K09422 - gmx:102660452 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2437 4 37983277 37985487 Mtr5g0144 5 1330605 1333540 ECH
Mtr5g0144 5 1330605 1333540 Mtr5g0144 5 1330605 1333540 ECH