Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0141 ATGATGACAACACCAAGCAATGGTAAAAGTGGTCTGAAGAAGGGACCATGGAGTTCAGAAGAGGATAAAAAATTAGTGGATCACATTCAGAAACATGGTCCTGGACGTTGGAGAGATCTTCCAAGGCGTGCAGGATTAAACAGATGTGGAAAGAGTTGTAGGTTAAGATGGACAAATTATTTAAGTCCTGATATTAAAAGAGGGAAATTTTCTGATGAAGAAGAGGAACTCATCATCAATTTACATTCAGTTCTTGGAAATAAGTGGGCATCTATAGCAACACATCTTCCAGGAAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTAAAGAAAAAGTTAATACAAATGGGGTTAGATCCAGTGACACACAAGCCAAGACCAGATTACATAGACCTTCCTAGCTATTTACAACAAATAATATTGAAGGCTGCAAATATTGTCGCCAATTGTGACATTAATGATCTAAGGTCACAATATTCAGATGCCAAATTCCATTTGCCACAACTCATGAGCACTACCAATGATATTATTAGTCCTTCTTCAGACTCACTGCCCCAAGAAAGTTTGATAAAGGATATTCACTCTAATAATTACCTACAAAATTTGTATGATGGTTCCAATATTGGTTTTCCATCTCAAATAATTCAGCCTAATTTGCAAAATTTTGAGGCCCCTATTGAGCAATTACGACCAATACAAGAATGTGAGTACTCTAAGAAATCTGATGAACAAATTGATTCTACATATGTTTCTTCCACGATAATATCATCAAATTCGCTTCCAAAGCTGATTCCGGTTTCACCTCAACGTTTAGTACCAGTTAAACTAGACGAAGAAAACATCATAAATGCAAACGATCGGTGTTGTGACCCTTCTTCTTCCACAACATTTGAAACTTGGGGAGATTTCATGAATGAGGAAGCAAATGATACTTATTGGAAAGATTTCATTGAGTAA 966 0.3592 MMTTPSNGKSGLKKGPWSSEEDKKLVDHIQKHGPGRWRDLPRRAGLNRCGKSCRLRWTNYLSPDIKRGKFSDEEEELIINLHSVLGNKWASIATHLPGRTDNEIKNFWNTHLKKKLIQMGLDPVTHKPRPDYIDLPSYLQQIILKAANIVANCDINDLRSQYSDAKFHLPQLMSTTNDIISPSSDSLPQESLIKDIHSNNYLQNLYDGSNIGFPSQIIQPNLQNFEAPIEQLRPIQECEYSKKSDEQIDSTYVSSTIISSNSLPKLIPVSPQRLVPVKLDEENIINANDRCCDPSSSTTFETWGDFMNEEANDTYWKDFIE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0141 321 CDD SANT 69 112 IPR001005 -
Mtr5g0141 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr5g0141 321 CDD SANT 16 61 IPR001005 -
Mtr5g0141 321 SMART sant 66 114 IPR001005 -
Mtr5g0141 321 SMART sant 13 63 IPR001005 -
Mtr5g0141 321 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mtr5g0141 321 Gene3D - 13 66 - -
Mtr5g0141 321 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr5g0141 321 MobiDBLite consensus disorder prediction 1 24 - -
Mtr5g0141 321 PANTHER MYB TRANSCRIPTION FACTOR 2 321 - -
Mtr5g0141 321 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr5g0141 321 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr5g0141 321 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mtr5g0141 321 Gene3D - 69 116 - -
Mtr5g0141 321 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 321 - -
Mtr5g0141 321 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0141 Mtr-Chr5 1293678 1298413 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0141 1 321 MYB Transcription Factor Family AT5G16770 43.750 1.09e-85 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr5g0141 Myb_DNA-binding 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0141 K09422 - gmx:547488 329.717