Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0104 ATGAACATGAATATCAATATGGATACCCCAGAGAGGAACCAGATCAACACCACCCTCTCTAAGTTCGAGGATTCACCAGTATTCAACTATATCAACAATTTATCTCCTATAAAGCCAGTTAAATCTGCTCACATAACTCAGACTTTCAATTCACTTAGCTTTTCATCGCCTCCGTCTGTTTTCGCATCGCCTCATGTTACCTCTCTCAAGGAGTCTAGATTCCTACGCAGACATAACCAGCCGGAAGAATCAAAGGCTAAAGATTCATATGAAGATGTAAATAAATTGTACTCAAATGATGGGGCTATTGAAGAGCCTACTCTTTCGCGTCATAACTCGAGGGAATTGGATGAAAGTGCTGAACAACTGATTTCAGTAGGAGATGTTTCTATTGAGCTATCTAATGAAGAAACGAAATTTACCGATGAGCTACCACAATCATTACAGTATAATTGTGGTAGTCCTGGTTATGATCCTACACTTTGTGGTGATGAGGATAACACACTTTTGGAATTGTCTGGTGAAGCCGTATCAGATGATGCATATCCTCAGGGAGGTTGTGTAACAGATTCAGTTGAGGCTGAATTGCATTTTCAAGGCACAAGTCAGATCGATCGAAAGGGTGAAAGTTCAGACTGTGATTGGGATGGTTTAATTCCCAATTCTGCTAATATGTTAATTGAAGCAGAAGCTTTTAAGGGTATGATGCAGAAATCATCAGGCTCTCCTATACGACTCAGCGATTTTGTCCCCCTGCTACAACAATGTACCAGGAATGATGATCAGAAGATTTACATGGTTGATTCAGTTGCTTCTAGTTCTCAACATGAAATTGAAAATCATTGTTCTGAGCTAGTAGCCGCAACGGACACTGACCATACACAGGACAATCTTGCCAATGGTTCTTCGATGACCGGCAATTCAAATGAGAAAATGGATAATGAGCTTGTTTCTGTCACACACCGTGGTATTCGGAGGCGCTGTCTTGACTTTGAGATGGCCAGTGTGCGAAGGAAGATTGCAGATGATAATTCAAACACCAACTCTAGTACACAACAGTCTGAAACAATGAATGCTGCTAATGAAAACCAATTGCTCCCTGCAAAACGCAACGCAAATTCACAAAGGTGCATTTTGCCGGGTATCGGTTTACACTTGAATGCACTTGCTTCCGTAAAGGATCACAAAGGCAAAGAAATTGAAAATTTGACTTCTGGAAGACAACTCAGCCTGACCAGCTCTACATCATTGCTACTCTCTGCATGCCAAGAACATCAGCATCTATCGGTCGTATCTGTATCAATATCATCTGAAAGAGAATTGGTCCCATCTGACAACGGGGTTCAGCCTACCGAAGATTGTCCCCAGCCAATAGCTTACATGGCTACTGAAGATTTCAATCAGAATAGCCCCAAAAAGAAAAGGCGTAAGTCAGAGCCAGTCGGAGAAATTGAGGGCTGCAAACGTTGTAATTGCAAGAAATCAAAGTGCTTGAAGCTTTATTGTGAGTGTTTTGCTGCTGGTGTCTACTGCATAGAACCTTGCTCCTGTCAAGAATGCTTCAACAAACCTATCCATGAAGATACCGTTCTTCAAACTCGCAAGCAAATTGAATCCCGCAACCCTCTTGCATTTGCTCCTAAAGTCATCCGAAGTGCTGATTCTGTGCCTGAAACTGGGATTGACCCAAACAAAACTCCAGCTTCAGCACGCCATAAAAGAGGATGCAACTGCAAAAAATCAAACTGCCTAAAGAAATATTGTGAATGCTATCAGGGTGGTGTTGGTTGCTCCATTAGCTGCAGATGTGAAGGGTGCAAGAACGCATTTGGTAGAAAGGATGGTTCTGCTTCTATAGGGATAGAAGGCGAGACAGAAGAAGAAACAGAAACTAGTGACAAGGGTGCAGAGGAAAAAGCTATTCAAAAAACTGAAATTCAGAATATCGAAGATCATCCTGATTCTGCTGGGGTCTCAACACCTTTACGGCTTTCCAGGTCATTGCTTCCGATGCCTTTTTCATCAAAGGGAAAGCCACCAAGATCTTTTGTTACAACCCTCACTGGTTCTGGATATTTGACCAGTCAAAAGCTTGCAAAACCAAATTCTCTTTGGTCTCAATCTAAGACTTTTCAGACTGTTCCAGACGATGAAATGCCAGAAATTCTCCGTGGTGGTGATAGCTCTCCTATAGCATGCATCAAAACTTCATCTCCAAATGGCAAAAGGATCTCTTCGCCTAACTGTGAAATGGGATCGTCGCCTAGTCGCAGAGGTGGCAGGAAGTTGATATTACAATCTATTCCATCGTTTCCTTCTCTCACACATCACCCTTAG 2337 0.4223 MNMNINMDTPERNQINTTLSKFEDSPVFNYINNLSPIKPVKSAHITQTFNSLSFSSPPSVFASPHVTSLKESRFLRRHNQPEESKAKDSYEDVNKLYSNDGAIEEPTLSRHNSRELDESAEQLISVGDVSIELSNEETKFTDELPQSLQYNCGSPGYDPTLCGDEDNTLLELSGEAVSDDAYPQGGCVTDSVEAELHFQGTSQIDRKGESSDCDWDGLIPNSANMLIEAEAFKGMMQKSSGSPIRLSDFVPLLQQCTRNDDQKIYMVDSVASSSQHEIENHCSELVAATDTDHTQDNLANGSSMTGNSNEKMDNELVSVTHRGIRRRCLDFEMASVRRKIADDNSNTNSSTQQSETMNAANENQLLPAKRNANSQRCILPGIGLHLNALASVKDHKGKEIENLTSGRQLSLTSSTSLLLSACQEHQHLSVVSVSISSERELVPSDNGVQPTEDCPQPIAYMATEDFNQNSPKKKRRKSEPVGEIEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQECFNKPIHEDTVLQTRKQIESRNPLAFAPKVIRSADSVPETGIDPNKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSISCRCEGCKNAFGRKDGSASIGIEGETEEETETSDKGAEEKAIQKTEIQNIEDHPDSAGVSTPLRLSRSLLPMPFSSKGKPPRSFVTTLTGSGYLTSQKLAKPNSLWSQSKTFQTVPDDEMPEILRGGDSSPIACIKTSSPNGKRISSPNCEMGSSPSRRGGRKLILQSIPSFPSLTHHP* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0104 778 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 7 776 IPR044522 GO:0003700
Mtr5g0104 778 ProSiteProfiles CRC domain profile. 486 611 IPR005172 -
Mtr5g0104 778 SMART CXC_2 571 612 IPR033467 -
Mtr5g0104 778 SMART CXC_2 485 526 IPR033467 -
Mtr5g0104 778 MobiDBLite consensus disorder prediction 731 753 - -
Mtr5g0104 778 MobiDBLite consensus disorder prediction 718 778 - -
Mtr5g0104 778 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 7 776 - -
Mtr5g0104 778 MobiDBLite consensus disorder prediction 617 636 - -
Mtr5g0104 778 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 488 523 IPR005172 -
Mtr5g0104 778 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 574 609 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0104 Mtr-Chr5 969189 974167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0104 7 774 CPP Transcription Factor Family AT3G22780 44.612 1.29e-160 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Mtr5g0104 TCR 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0104 - - mtr:MTR_5g006530 1508.81