LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr5g0073	ATGATGCAAGCAGCAGCAGAGAAGCTAGTTTCCGTCATAGGTCACTGGCTACCGTTCCCGTTCCGACGAGAGCAGCAACAACAACAACAAAGAATAGTTTTCTACGATGAAGCTGATGATAACGATATGTGGGTGATTTGTCCGTTCAAGAATTGCTCAGGTTATCTCTTGAATGATGGGTTTCAAACTGTTATTGATGCAGATTGCCCCATTTGTCATAGGTTATTCTGCTCGCGATGCAACGTTCCTTGGCATGCAGGTGAAACCTGTCAACAATTCCAACACAACAAACTCAAATGTGAAATCCTTGATCCCTGCGAAAACCATTTTTCAAAGAAGAGAGAATCTCCCTTTGGTGATAAAGAAAATCTTACACCAGTTTCACAGTCCAAGTCCTTATGTCCAATTAGAAAGAGTGCGCGTCTATGTAATGAGTCTCCTAGTCCTCCTCCAGTTCAAGAAGATTTGGTGCAATCTTGTATTGTTGGGTGGCAAAAGACTACTTATTGTCCATTCAAGAATTGTTCGGTTTTGTTGGTGAATGATGGCGATGATGTTGTTACTAGCGCGGAGTGTCCTTCATGTCATAGGCTATTTTGTGCGCAATGTATGGTTCCGTGGCATGGAGGAATCAACTGTGACGAATTCAAACAACAAAAGAAGGGGAAAGAAGCAGCAGCTGCCATGGAGACCGAAACTGGTTCTCGACAGTCATCAAAATCCTTTTGTGGTGTATGTTTTGATTTTGTACCAGAGAATGATATTGTTAGAGGTAGTGGCACATGTAACCATCCATTTTGTGCTAATTGTATATCTAATCATGTGGCTGCACAACTAAGCCAGAGTGTAATGGAGTTTAATTGTCCAAATCCAAGATGTTTCGAGGAGTTGAAGCCGCAACATTTGCATTCCATTTTGCCTGAAGAAGTCATTGTTCAATGGGAATCTGAAAGGATCTAG	960	0.4188	MMQAAAEKLVSVIGHWLPFPFRREQQQQQQRIVFYDEADDNDMWVICPFKNCSGYLLNDGFQTVIDADCPICHRLFCSRCNVPWHAGETCQQFQHNKLKCEILDPCENHFSKKRESPFGDKENLTPVSQSKSLCPIRKSARLCNESPSPPPVQEDLVQSCIVGWQKTTYCPFKNCSVLLVNDGDDVVTSAECPSCHRLFCAQCMVPWHGGINCDEFKQQKKGKEAAAAMETETGSRQSSKSFCGVCFDFVPENDIVRGSGTCNHPFCANCISNHVAAQLSQSVMEFNCPNPRCFEELKPQHLHSILPEEVIVQWESERI*	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr5g0073	319	SUPERFAMILY	RING/U-box	30	96	-	-
	Mtr5g0073	319	ProSitePatterns	Zinc finger RING-type signature.	262	271	IPR017907	-
	Mtr5g0073	319	SUPERFAMILY	RING/U-box	154	219	-	-
	Mtr5g0073	319	SMART	ibrneu5	27	90	IPR002867	-
	Mtr5g0073	319	SMART	ibrneu5	153	213	IPR002867	-
	Mtr5g0073	319	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	41	100	IPR031127	GO:0004842\|GO:0016567
	Mtr5g0073	319	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	164	219	IPR031127	GO:0004842\|GO:0016567
	Mtr5g0073	319	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	229	316	IPR031127	GO:0004842\|GO:0016567
	Mtr5g0073	319	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	164	219	-	-
	Mtr5g0073	319	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	41	100	-	-
	Mtr5g0073	319	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	229	316	-	-
	Mtr5g0073	319	Pfam	IBR domain, a half RING-finger domain	165	213	IPR002867	-
	Mtr5g0073	319	Pfam	IBR domain, a half RING-finger domain	33	90	IPR002867	-
	Mtr5g0073	319	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	236	319	IPR013083	-
	Mtr5g0073	319	ProSiteProfiles	Zinc finger RING-type profile.	243	292	IPR001841	-
	Mtr5g0073	319	SUPERFAMILY	RING/U-box	239	315	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr5g0073	Mtr-Chr5	749435	750394	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr5g0073	184	293	ARIADNE family	AT1G05890	24.138	3.70e-06	46.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr5g0073	K11975		-	mtr:MTR_5g007670	117.857