Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0072 ATGCTGTCGAATCATATTCAAAACGGCATCGAATCGGCGAGACTCGCTTGGTCACGGATTCCGAACTCCGATGAATCACCGTTCGTCCTTGATGATGACGGCGTTGGGATTCTTAAGAAGAACGATGGAAGCGCTGTTGAGAGTCTTGACTATGAAGTCATAGAGAATTTTGCTTATCGAGAAGAACAGGCGCATAGAAGAAGGAAGCTGTATGTGAGTTACTTGCTGGTGGTGAAATGGTTCTTTGCATTGCTCATCGGCATTTGTACCGGACTTGCTGCTGTTTTCATCAATATTTCTGTTGAAAATTTTGCTGGTTGGAAGTACTCGGTGACATTTAGTATAATCCAGAAATCATACGTCGCTGGCTTTATTGTATATATTTTGATCAACTTGGTTTTAGTTTATTCCTCCGTATATATCATCACACAATTTTCACCAGCAGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAACGGAGTTGATACTCACGGCATCCTTCTTTTCAGAACTTTGATTGGAAAGGTATTTGGAAGCATTGGTTCAGTGGGGGGAGGCCTCGCTTTGGGTAAAGAAGGTCCTCTAGTCCATACTGGTGCTTGTATTGCCTCTTTGCTCGGACAAGGTGGATCCACTAAGTATCATCTAAATTCAAGGTGGTTTAATGTATTCAAAAGTGACCGGGATCGCCGTGATCTTGTAACTTGTGGGTGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCAGTTGGTGGCGTATTGTTTGCATTGGAAGAGGTTACATCGTGGTGGAGGAGTCAACTAATGTGGCGTGTGTTTTTCACTTCTGCTATTGTGGCTGTTGTGGTGCGAACTGCGATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGATCAGGCGGATTCATAATATGGGATGTATCAGATGGTCAGGAGGATTACTCGTTTGCAGAGCTATTGCCAATGGCTATTATTGGGGTTATTGGAGGTCTATTAGGAGCTTTATTTAACCAGCTTACACTTTATATTACTACTTGGCGTCGAAATCATCTTCACAAGAAAGGGAACCGAGTCAAGATTATTGAAGCATGCCTTGTCTCCGTTCTAACATCAGTTATTTCATTTGGCTTGCCGCTTCTACGAAAATGCAGTCCATGCCCTGAACCTGATCCTGCATCTGGTATTGAGTGTCCACGACCTCCTGGAATGTATGGGAATTATGTTAATTTCTTTTGTAGCAAAGACAACGAATACAACGATCTTGCTACTATTTTCTTCAATACACAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATAAACGAGTACAGTTCCCAAAGTTTGTTAACCTTTTTGGTCATGTTTTATGGTTTAGCAGTTGTGACGTTTGGTACTGCCGTGCCTGCTGGTCAATTTGTTCCCGGTATTATGATCGGATCAACATATGGGCGTCTTGTTGGCATGTTTGTTGTAAAATATTACAGAAAACTCAACATCGAAGAGGGAACATATGCTTTGTTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTTTCTCTGTGTGTCATTATGGTTGAAATCACAAATAACTTGAAGCTTTTACCACTTATTATGCTCGTTCTTCTTATATCGAAGGCTGTTGGTGATGCTTTTAATGATGGAATCTATGAAGAGCAAGCTCGATTGAGAGGCATTCCATTACTAGACTCAAAGCCTAAATATGAGATGCGGAATATGATGGCAAAGGAGGCCTGCGGGAGTGGAAGGGTGGTCTCTTTGCCTCGTGTTGTTAAGGTTTCAGATGTAGTTTCCATTCTGCAGAGCAACACACACAACGGTTTTCCAGTGATTGATCACACAAGAAGTGGAGAACCACTTGTTATTGGATTAGTGCTTCGGAGTCATTTATTGGTCATTCTACAGTCTAAGGTTGATTTCCAGCATAGTCCTTTACCCTCTGATCCAAGAACTGGAGGCAGGTCAATAAGGCATGATTCTGGTGAATTTGCAAAGCCTGTTTCTAGTAAAGGAATATGTCTCGACGATATACATCTAACATCAGAGGACTTGGAAATGTACATAGATCTTGCCCCATTTTTGAATCCCTCACCATATATTGTACCGGAAGATATGTCTCTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGGCATTTATTTGTTGTTCCTCGCCCGTCACGTGTTCTTGGCTTGATAACCAGAAAAGATTTGTTAATTGAGGACGCAGAAAATGTGAATACATTAGAGCTCCAGGCAACTAGTGTAAGAATTCAGCATCAGAATAAAAGATTGACGACAAGGAATCCAGATGCGGAGCGCCCCTTGCTGAATGGTCTTCTGGCTTAG 2400 0.4221 MLSNHIQNGIESARLAWSRIPNSDESPFVLDDDGVGILKKNDGSAVESLDYEVIENFAYREEQAHRRRKLYVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKYSVTFSIIQKSYVAGFIVYILINLVLVYSSVYIITQFSPAAAGSGIPEIKGYLNGVDTHGILLFRTLIGKVFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDVSDGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHKKGNRVKIIEACLVSVLTSVISFGLPLLRKCSPCPEPDPASGIECPRPPGMYGNYVNFFCSKDNEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYGLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNDGIYEEQARLRGIPLLDSKPKYEMRNMMAKEACGSGRVVSLPRVVKVSDVVSILQSNTHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDPRTGGRSIRHDSGEFAKPVSSKGICLDDIHLTSEDLEMYIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDAENVNTLELQATSVRIQHQNKRLTTRNPDAERPLLNGLLA* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0072 799 PRINTS Chloride channel signature 147 164 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr5g0072 799 PRINTS Chloride channel signature 178 197 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr5g0072 799 PRINTS Chloride channel signature 242 261 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr5g0072 799 PRINTS Chloride channel signature 473 493 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr5g0072 799 PRINTS Chloride channel signature 508 524 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr5g0072 799 PRINTS Chloride channel signature 526 545 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr5g0072 799 PRINTS Chloride channel signature 564 578 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr5g0072 799 Pfam CBS domain 710 757 IPR000644 -
Mtr5g0072 799 PRINTS Plant CLC chloride channel signature 52 60 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr5g0072 799 PRINTS Plant CLC chloride channel signature 263 271 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr5g0072 799 PRINTS Plant CLC chloride channel signature 277 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr5g0072 799 PRINTS Plant CLC chloride channel signature 295 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr5g0072 799 PRINTS Plant CLC chloride channel signature 425 441 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr5g0072 799 ProSiteProfiles CBS domain profile. 709 766 IPR000644 -
Mtr5g0072 799 Gene3D - 592 762 IPR046342 -
Mtr5g0072 799 SUPERFAMILY CBS-domain pair 582 756 IPR046342 -
Mtr5g0072 799 Gene3D Clc chloride channel 72 579 - -
Mtr5g0072 799 SUPERFAMILY Clc chloride channel 63 579 IPR014743 -
Mtr5g0072 799 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 796 - -
Mtr5g0072 799 CDD CBS_pair_voltage-gated_CLC_euk_bac 599 756 - -
Mtr5g0072 799 Pfam Voltage gated chloride channel 137 557 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr5g0072 799 SMART cbs_1 712 760 IPR000644 -
Mtr5g0072 799 SMART cbs_1 598 650 IPR000644 -
Mtr5g0072 799 CDD ClC_6_like 47 577 - -
Mtr5g0072 799 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0072 Mtr-Chr5 719620 731140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0072 1 774 Ion Channels AT5G26240 83.484 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0072 K05016 - gmx:100811908 1451.8