Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0070 ATGGAGCTTCTACCATCATCAGAGAAGAAAGGCCAGAAAAGAAAACTGGAACAACAAGAAGAACAATTCCAACAAGTCACACAGATCTCCCTTCCTCTCACCGGAGACGCTCTCGACGCCGTTCTCTCCGACGTCGATCAACACGTTTCAATTCTCCTTTCATCTTTCTCATCCAACGAATTCGATAGAGCTTCCGCTAAACGCGCCACTCACGCTCTCGCCGATCTTGCCAAAAACGAGGAAATTGTGAATGTCATTGTTGAAGGAGGTGCTGTTCCGGCTTTGATTAAGCATCTTCAACCACCGACTCAAAATGATTCTGTTCAAAAGCCGTTGCCGTTTGAACATGAGGTTGAGAAAGGGAGTGCTTTCGCGCTTGGACTTCTTGCTGTCAAGCCAGAACATCAACAGCTCATTGTAGACAGTGGTGCCTTGAAGCATCTTGTTGATCTTTTGAAGAGACATAAGAATGGACTAACATCACGTGCCATTAATAGTCTCATTCGGAGGGCTGCAGATGCGATCACGAATCTTGCTCACGAGAACAGCAGTATTAAAACCCGTGTCAGGACGGAAGGTGGGATTCCACCATTAGTTCATTTGCTTGAATTTGCGGATACAAAAGTGCAAAGAGCAGCTGCTGGTGCTTTACGAACCCTGGCTTTTAAAAATGATGAAAACAAGAATCAGGTTGGTGTGATCGGAAATCTGGTCCACTCATCCCCCAATATAAAGAAAGATGTTATTCTTGCTGGAGCCTTGCAACCTGTTATTGGATTACTTAGCTCCTGTTGCTCTGAAAGCCAGAGGGAAGCAGCATTGTTACTTGGACAGTTTGCAGCGACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTACGACCTTTGATAGAGATGCTTCAGTCTTCAGATGTTCAGCTCAAAGAAATGTCTGCTTTTGCATTGGGGAGATTGGCACAGGACACACATAACCAAGCTGGTATTGCACACTCTGGCGGATTAGTGCCACTACTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGATAATGTGCCCGACTTTATTAGGATAGGTGGAATTAAGAGATTTCAGGATGGAGAGTTTATAATCCAAGCAACTAAGGATTGTGTTGCTAAGACATTGAAAAGACTAGAAGAGAAGATTAATGGTCGTGTGCTGAACCATTTGTTATATCTTATGAGAGTTTCTGAAAAGGCATTCCAAAGACGAGTTGCTTTGGCTCTTGCTCATCTTTGTTCTGCAGATGACCAGAAAAAAATATTTATTGACCACAATGGGCTGGAGTTGCTTATTGGACTTCTTGGCTCATCTTGCCCTAAGCAGCAACTTGATGGTGCTGTGGCTTTATTCAAGTTGGCCAACAAAGCTATGACTCTGTCTCCTGTAGATGCTGCTCCTCCATCCCCAACACCTCAGGTCTATTTGGGGGAGCAGTATGTAAACAATGCTACCCTGTCCGACGTTACATTTTTGGTTGAAGGTAAACGGTTTCATGCTCATAGAATCTGTCTACTTGCATCTTCAGATGCATTTCGTGCGATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATTGAGATTCCAAATATTAGATGGCAGGTCTTTGAGCTTATGATGAGATTTATCTATACTGGATCAGTTGATGTCACTCTTGAAATTGCTCAAGATCTCCTCCGAGCAGCTGATCAATATCTCTTGGAAGGGCTTAAGAGACTATGTGAATACACGATTGCACAGCATGTATCACTCGAGAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCTACATCATTGAGACACACGTGCATCCTTTTTATCTTGGGGCACTTCGATAAATTAAGTGAAACGCCAGGGAACTCTGATTTAATTCAGCGTACAATACCAGATATCCGCAATTACTTTGTTAATGCTCTTACAAAGGGGAACTCCAACATCCAGGCGTAG 2034 0.4346 MELLPSSEKKGQKRKLEQQEEQFQQVTQISLPLTGDALDAVLSDVDQHVSILLSSFSSNEFDRASAKRATHALADLAKNEEIVNVIVEGGAVPALIKHLQPPTQNDSVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALKHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRTEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQVGVIGNLVHSSPNIKKDVILAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSSDVQLKEMSAFALGRLAQDTHNQAGIAHSGGLVPLLKLLDSKNGSLQHNAAFALYGLAENEDNVPDFIRIGGIKRFQDGEFIIQATKDCVAKTLKRLEEKINGRVLNHLLYLMRVSEKAFQRRVALALAHLCSADDQKKIFIDHNGLELLIGLLGSSCPKQQLDGAVALFKLANKAMTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFHAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWQVFELMMRFIYTGSVDVTLEIAQDLLRAADQYLLEGLKRLCEYTIAQHVSLENVSSMYELSEAFNATSLRHTCILFILGHFDKLSETPGNSDLIQRTIPDIRNYFVNALTKGNSNIQA* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0070 677 Coils Coil 9 29 - -
Mtr5g0070 677 Gene3D Potassium Channel Kv1.1; Chain A 492 639 IPR011333 -
Mtr5g0070 677 Gene3D - 34 163 IPR011989 -
Mtr5g0070 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 335 377 IPR000225 GO:0005515
Mtr5g0070 677 Gene3D - 164 231 IPR011989 -
Mtr5g0070 677 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 673 IPR044282 -
Mtr5g0070 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 235 IPR000225 GO:0005515
Mtr5g0070 677 SUPERFAMILY ARM repeat 406 584 IPR016024 -
Mtr5g0070 677 Pfam Armadillo/beta-catenin-like repeat 189 221 IPR000225 GO:0005515
Mtr5g0070 677 Pfam Armadillo/beta-catenin-like repeat 283 322 IPR000225 GO:0005515
Mtr5g0070 677 Pfam BTB/POZ domain 504 606 IPR000210 GO:0005515
Mtr5g0070 677 SMART arm_5 79 131 IPR000225 GO:0005515
Mtr5g0070 677 SMART arm_5 439 479 IPR000225 GO:0005515
Mtr5g0070 677 SMART arm_5 324 364 IPR000225 GO:0005515
Mtr5g0070 677 SMART arm_5 283 323 IPR000225 GO:0005515
Mtr5g0070 677 SMART arm_5 241 281 IPR000225 GO:0005515
Mtr5g0070 677 SMART arm_5 132 180 IPR000225 GO:0005515
Mtr5g0070 677 SMART arm_5 182 222 IPR000225 GO:0005515
Mtr5g0070 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 143 193 IPR000225 GO:0005515
Mtr5g0070 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 90 144 IPR000225 GO:0005515
Mtr5g0070 677 SUPERFAMILY POZ domain 503 606 IPR011333 -
Mtr5g0070 677 Gene3D - 232 485 IPR011989 -
Mtr5g0070 677 CDD BTB_POZ_ARIA_plant 498 613 - -
Mtr5g0070 677 ProSiteProfiles BTB domain profile. 511 578 IPR000210 GO:0005515
Mtr5g0070 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Mtr5g0070 677 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 7 673 - -
Mtr5g0070 677 SUPERFAMILY ARM repeat 49 379 IPR016024 -
Mtr5g0070 677 SMART BTB_4 511 608 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0070 Mtr-Chr5 689642 698734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0070 287 459 U-box Gene Family AT5G40140 26.590 4.94e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Mtr5g0070 BTB 3.8e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0070 - - gmx:100812456 1118.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0070 5 689642 698734 Mtr1g3930 1 50936153 50944838 PCT