Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0065 ATGGAGCAAGCACTTATCGGTGCACTAAACCTCGTTTCTCGAGACTTACCTCTTCCTCCTGAACTCTTCAACACCGTTTCTTCTATCTGTTACGGATCTGACTCCAAACCTCTCTCTCTCAACGCTGAGCAAGATGATGATAGTTTACTGACTGAGCTTCAAGATGCAATTTCCAAACAACGACCTAATTGTTCGTCTAGTTCGAAATTGAATAATGCTATGAAAGTTCGTACTCAAGCTCGGTTTCAGAATCGATTAACGCAGCTTGAAGGATTGCGTTGGAACTGGGGGGACAACCTACAGACGAAGTGCTTGCTCGAGCTTTATGGACTAAAGCTAGCGGAGTTACAGGGGAAGGTTCGAACGGAAGTGAGCTCTGAATATTGGCTTAATGTTAACTGTGCATATCCCGACAAGCAATTGTTTGACTGGGGCATGATGCGGTTGCGGCGTCCTCCTTATGGAATTGGAGATCCATTTGCCATGGATGCTGATGATCAAATAAGGAAGAAACGGGATGCGGAGAGACTATCTAGAATAGAAGAGCAAGCAAAAGGTCAGATAGAGACCAGAACAAGAAGATTTTTTGCTGAAATACTGAATGCTGTCCGTGAGTTCCAGTTACAAATCCAAGGTTCTTTGAAGAGGAGAAAACAGAGGAATGATGCTGTTCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACTCGGGCTGAGAAGCTGAGATTCCAAGCTTTAAAAGCTGATGATCAGGAAGCTTACATGAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACGTTGCTTCTTGAAGAAACAAATAAACTGCTTGTAAATTTGGGAGCAGCGGTTCAACGTCAAAGAGACTCCAAACAATCAAATGGTATTGAACCCTTGGAAGATTCAGATGCTTTGAAGAATGGAATATCTAAGGAATCACCTCTTGAGGAAGATGAGGATTTGATGGATTCTGATCATAATGATGACAGTAGTGATTTACTTGAAGGTCAGCGGCAATACAATTCAACCATACATTCCATTCAAGAAAAGGTAACTGAGCAACCATCTATGCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAAGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGAAAGACAATACAAACCATTTCGTTGATAGCACATCTTATGGAATACAAGGGTGTGACTGGCCCTTTTTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGGTCAACGAGTTCGCAACATGGGCTCCTAGCATTACAGCTGTTTTATATGATGGACGAATGGATGAGAGGAAAGCAATAAAGGAAGAAATTTCAGGGGAGGGGAAGTTTAATGTTCTTTTAACACACTATGATCTTATAATGAGAGATAAAGCATTTCTGAAGAAAATCCATTGGAAATACTTGATTGTTGATGAAGGCCATCGATTGAAGAATCATGAGTGTGCTCTAGCAAGAACCCTGGACAACAGCTATCACATTGAACGAAGACTTCTGTTGACCGGTACCCCAATTCAGAACAGCCTGCAGGAATTGTGGTCCCTGCTCAATTTTCTCCTCCCAAACATTTTCAATTCAGTTCAAAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGATCGAGTTGATGTGTCCTTAACAGATGAAGAACAATTATTGATTATTCGCCGTCTGCATCAGGTAATAAGGCCCTTCATACTACGAAGGAAAAAGGCTGAGGTAGAAAAGTTTCTTCCTGGTAAATCTCAGGTCATACTCAAATGTGACATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTGACCGACGTGGGCAGAGTTGGGTTAGACTATGGTTCTGGAAAATCAAAAAGTCTACAGAACTTGACAATGCAACTCAGGAAGTGCTGTAACCATCCCTACCTCTTTGTGGGAAACTATGATATATATCGTAGGGAGGAGATCGTCAGAGCATCAGGGAAATTTGAACTTCTTGACCGCTTGCTTCCAAAACTCCGTAGAGCTGGTCATAGAGTCCTCCTTTTTTCACAAATGACTCGCCTCATGGACATTCTTGAGGTTTATCTTCAACTTCATGATTATAAATTTCTTAGACTTGATGGCTCAACAAAAACCGAGGAAAGAGGTTCCCTTCTAAAGAAATTCAATGCTCCTGACTCGCCATATTTTATGTTTCTTTTGAGCACTCGTGCCGGAGGTCTTGGTTTGAACTTGCAAACAGCAGATACTGTTATAATCTTTGACAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCCCATCGCATTGGGCAAAAAAAGGAAGTTAGAGTTTTTGTGTTAGTTAGTGTAGGATCCATTGAAGAGGTGATATTGGAACGTGCTAAACAAAAGATGGGAATTGATGCCAAAGTCATCCAGGCTGGTCTTTTCAATACAACGTCAACAGCCCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGTAGAGGTAGCAGCTCACTTGGAACAGATGTGCCAAGTGAGAGAGAAATTAACCGCCTTGCAGCCCGATCGGATGAGGAATTTTGGCTGTTCGAGAGAATGGACGAAGATAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGACGAGAACGAACTGCCAGATTGGGTATACTCTGCACTAAATAAGGATGAAAAGGCCAAAGCTTTTGACAGCAGTGCTGTTACTGGAAAGCGGCCAAGAAAAGAAGTGGTATATGCAGATACGTTAAGCGATCTACAATGGATGAAGGCTGTGGAAAGCGGACATGATGTATCTAATTCTTCAGCTAAAGGAAAAAGAAAAATCCGCCTCCCTATTGACAGCCATGCACAAACAAGTGATGACACCGGGGCAGAAGAAAGGTTGTTAGAGTTAAGCAACACCATGGCAAATGAAAGATCAAATGAAGACACTTTTTATGGGACCCCTGCCTCTAAGAGGTTCAAGCATGAAGAAGTAAGTTCCCATAAACATGAAATCAAGGATACCGGTGTAAGTGGTTTGAACGAGCATGTGTTTTCTTGGAATACTATTAGAAAAAAGAGATCAAGCTATCCTAGCCAGGGTTCATTATCTGATACCAAAGGGCAGAGTTCAAATGGAAGAAGAGCAAGCTAA 3192 0.4207 MEQALIGALNLVSRDLPLPPELFNTVSSICYGSDSKPLSLNAEQDDDSLLTELQDAISKQRPNCSSSSKLNNAMKVRTQARFQNRLTQLEGLRWNWGDNLQTKCLLELYGLKLAELQGKVRTEVSSEYWLNVNCAYPDKQLFDWGMMRLRRPPYGIGDPFAMDADDQIRKKRDAERLSRIEEQAKGQIETRTRRFFAEILNAVREFQLQIQGSLKRRKQRNDAVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQRDSKQSNGIEPLEDSDALKNGISKESPLEEDEDLMDSDHNDDSSDLLEGQRQYNSTIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAHLMEYKGVTGPFLIVAPKAVLPNWVNEFATWAPSITAVLYDGRMDERKAIKEEISGEGKFNVLLTHYDLIMRDKAFLKKIHWKYLIVDEGHRLKNHECALARTLDNSYHIERRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKAEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDYGSGKSKSLQNLTMQLRKCCNHPYLFVGNYDIYRREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEVYLQLHDYKFLRLDGSTKTEERGSLLKKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGSSSLGTDVPSEREINRLAARSDEEFWLFERMDEDRRQKENYRSRLMDENELPDWVYSALNKDEKAKAFDSSAVTGKRPRKEVVYADTLSDLQWMKAVESGHDVSNSSAKGKRKIRLPIDSHAQTSDDTGAEERLLELSNTMANERSNEDTFYGTPASKRFKHEEVSSHKHEIKDTGVSGLNEHVFSWNTIRKKRSSYPSQGSLSDTKGQSSNGRRAS* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0065 1063 MobiDBLite consensus disorder prediction 314 333 - -
Mtr5g0065 1063 MobiDBLite consensus disorder prediction 287 309 - -
Mtr5g0065 1063 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 375 541 IPR014001 -
Mtr5g0065 1063 PANTHER ATP-DEPENDENT HELICASE BRM 44 1016 - -
Mtr5g0065 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 590 841 IPR027417 -
Mtr5g0065 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 588 IPR027417 -
Mtr5g0065 1063 Gene3D - 598 817 IPR027417 -
Mtr5g0065 1063 SMART helicmild6 702 786 IPR001650 -
Mtr5g0065 1063 Pfam Helicase conserved C-terminal domain 673 786 IPR001650 -
Mtr5g0065 1063 Gene3D - 354 597 IPR038718 -
Mtr5g0065 1063 Pfam SNF2-related domain 366 654 IPR000330 GO:0005524|GO:0140658
Mtr5g0065 1063 MobiDBLite consensus disorder prediction 1035 1063 - -
Mtr5g0065 1063 CDD SF2_C_SNF 663 797 - -
Mtr5g0065 1063 SMART SnAC_2 879 940 IPR029295 GO:0042393
Mtr5g0065 1063 Pfam Snf2-ATP coupling, chromatin remodelling complex 875 940 IPR029295 GO:0042393
Mtr5g0065 1063 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 676 843 IPR001650 -
Mtr5g0065 1063 PANTHER SNF2/RAD54 HELICASE FAMILY 44 1016 - -
Mtr5g0065 1063 SMART ultradead3 359 552 IPR014001 -
Mtr5g0065 1063 Coils Coil 877 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0065 Mtr-Chr5 658561 666912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0065 669 814 RAD5 or RAD16-like Gene Family AT5G43530 36.667 1.06e-20 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr5g0065 SNF2_N 1.5e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0065 - - gmx:100775993 1733.38