Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0056 ATGTTTAATACTCCACATCAAAAACACAGCAAGAACATGTATCAGAATAGGTCAACAAGGACAAGAGAAGAAGCAAACCAAATGAACATGGAGGCTCCTTCAAGTGATGACCAAGAATCCAACCAACGTCGCAGAAAAAGGACATATCGCCGCCACACACAGCAACAAATTGATGAAATGGATACCTTCTTCAAGCAGTGTCCTAATCCTAATGATGCTCAGAGAAGAGAGCTGAGCCTTCGGACTGGGTTAGACCCAACGCAAATCAAGTTTTGGTTTCAGAACAGGCGCACTTCACTGAAGGTTCAAACCGATAGAGATGAGAATGAGCTATTAAAGATTGAGAATGAAAAACTTCGAGATGAACTTGATAGATACAAGGGGGCAATTAGTACCACATGCAAAGTATGTGGAAGTTCCTCTAACGCTGGGGAAATGTCACATGAGGAGCAGCAGCTAAGACTGGAGAATGCTCTCCTTAGGAAAGAGCTTGAAAGGTTTGTGGGCGAGACGCCGACAGACTCTCGTGCCAATATAACATCATCCAACAATAGCACTCATGTTGCTTCACACTCTACGGATTTTGGAGTTGCCGGTGGTAACAATGGAGCAAGCCACCGCATGGTAGGAGAGGGTTTAAGCGTTGGTGGCTCCTCAGTGCAGATTAAGGGTCTTAATGAGAAGCAAAAGATTGTAGAGCTTGCTGTTGTTGGAATGGATGAACTGACCAAATTGGCTAGGACATATGGACCCCCTCTTTGGATCCCCACCAACTATGTGACTGAGATTCTCAATGGAGAGGAATACATGAAGTATTTCCCAAGGGGTAATGGTCCCAACACATGTGGATTAAGGCTTGAGGGTTCAAAAGAATCCGTGGTGGTCATGATTAATGCTCCTGATCTTGTAGATATCCTCATGGATGTGAATCAATGGTCAAATATGTTTTGCGGCATTGTTTCTAGAGCAGCAACACTTGAAGTCCTTTCAACTGGAGTGGGAGGTAACTACGATGGAGCCTTGCAAGTGATGACAGCTGAGTTTCAAGTCCCCTCCCCACATGTTCCTACTCGTCAAAACCATTTTGTGAGATACTGTAAACTGCACCCAGATGGAATATGGGTAGTGGCTGATGTGTCCTTGCATCTTTTAAATGCAGCATCTGCTAGTAGTAGTAGTAGCAGTACTGCTTCAAGAACCAACAGAAGACCCTCTGGTTGTTTGATTGAGACCCTCCCAAATGGTCTCACTAAGGTTACATGGATTGAAAATGTAGAAGTTGATGATCAGGTGGTGCAAAATATATATAAACCTCTAGTTAATTCTGGACTTGCATTTGGAGCTAAACGCTGGGTAGCTACATTACATCGACAAAGCGATCGTCTTTTTTTTAGAACAGCCACCAACGTTCCACGGGAACATCATGTGAGATTGACTCCTGAGGGAAAGAAAAGTATATTGAATCTTGCGGAAAGGTTGGTAGCTAGCTTTAGTACAAGTATTGGTTCTTCTACAACACATGCTTGGACAAAGGTACCTGGAAACGGACCGGAGGTTGTAATGGTCATGACAAAAAGATATATCGATGAATCGAGCATTGACAAACCCGTCAGTGTAGTGCTAAGTGCTGCTACTTCTTTTTGGCTTCCAGTTCCTCCAAGGAGGGTGTTTGATTTTCTTCGAGATCAAAACACAAGAAAACATTGGGATATTCTCTCCGCCGGCGGTATAGTTCATGAATTGGCTCACATTTCAAATGGGCGTGATTCTGGCAACTATGTCTCCTTATTTCGTATCACTAGTGAAAATTCAGAGCAGAGTGATGTGGTAGTACTGCAAGAGAATTGCACTGATGTAACTGGCTCATATGTAGTATATGCGCCTGTGCAAATACCTACAATGCATGAAATCCTGAATGGCGGCGACTCAAGTCGTCTCACTCTGCTTCCTTCCGGATTCGCTATTTTTCCAGATGGGTGTATAACAAATGGAGGACCAATTATGAATGTTGGATCTGGAGGGTCTCTTGTCACAGTTGCATTTCAAATTATAGTTGATTCTATTCCACATGCAAGGCTAGCTCTGGGTTCAATCACCACCGTTAACACTTTGATCAAGAACACTGTGGAAAGGATTAGAACTGCAGTGATGCCTAATGGCATCTAA 2166 0.4344 MFNTPHQKHSKNMYQNRSTRTREEANQMNMEAPSSDDQESNQRRRKRTYRRHTQQQIDEMDTFFKQCPNPNDAQRRELSLRTGLDPTQIKFWFQNRRTSLKVQTDRDENELLKIENEKLRDELDRYKGAISTTCKVCGSSSNAGEMSHEEQQLRLENALLRKELERFVGETPTDSRANITSSNNSTHVASHSTDFGVAGGNNGASHRMVGEGLSVGGSSVQIKGLNEKQKIVELAVVGMDELTKLARTYGPPLWIPTNYVTEILNGEEYMKYFPRGNGPNTCGLRLEGSKESVVVMINAPDLVDILMDVNQWSNMFCGIVSRAATLEVLSTGVGGNYDGALQVMTAEFQVPSPHVPTRQNHFVRYCKLHPDGIWVVADVSLHLLNAASASSSSSSTASRTNRRPSGCLIETLPNGLTKVTWIENVEVDDQVVQNIYKPLVNSGLAFGAKRWVATLHRQSDRLFFRTATNVPREHHVRLTPEGKKSILNLAERLVASFSTSIGSSTTHAWTKVPGNGPEVVMVMTKRYIDESSIDKPVSVVLSAATSFWLPVPPRRVFDFLRDQNTRKHWDILSAGGIVHELAHISNGRDSGNYVSLFRITSENSEQSDVVVLQENCTDVTGSYVVYAPVQIPTMHEILNGGDSSRLTLLPSGFAIFPDGCITNGGPIMNVGSGGSLVTVAFQIIVDSIPHARLALGSITTVNTLIKNTVERIRTAVMPNGI* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0056 721 ProSitePatterns 'Homeobox' domain signature. 78 101 IPR017970 GO:0000981|GO:0006355
Mtr5g0056 721 SMART START_1 233 461 IPR002913 GO:0008289
Mtr5g0056 721 SUPERFAMILY Homeodomain-like 30 101 IPR009057 -
Mtr5g0056 721 CDD homeodomain 53 103 IPR001356 GO:0003677
Mtr5g0056 721 Gene3D - 285 461 IPR023393 -
Mtr5g0056 721 ProSiteProfiles 'Homeobox' domain profile. 43 103 IPR001356 GO:0003677
Mtr5g0056 721 SUPERFAMILY Bet v1-like 228 461 - -
Mtr5g0056 721 MobiDBLite consensus disorder prediction 173 190 - -
Mtr5g0056 721 Pfam START domain 262 459 IPR002913 GO:0008289
Mtr5g0056 721 Coils Coil 102 129 - -
Mtr5g0056 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 718 - -
Mtr5g0056 721 SUPERFAMILY Bet v1-like 479 713 - -
Mtr5g0056 721 MobiDBLite consensus disorder prediction 171 190 - -
Mtr5g0056 721 MobiDBLite consensus disorder prediction 1 36 - -
Mtr5g0056 721 SMART HOX_1 45 107 IPR001356 GO:0003677
Mtr5g0056 721 CDD START_ArGLABRA2_like 228 459 - -
Mtr5g0056 721 Gene3D - 30 117 - -
Mtr5g0056 721 MobiDBLite consensus disorder prediction 1 54 - -
Mtr5g0056 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 26 718 IPR042160 -
Mtr5g0056 721 ProSiteProfiles START domain profile. 224 464 IPR002913 GO:0008289
Mtr5g0056 721 Pfam Homeodomain 46 98 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0056 Mtr-Chr5 539442 545125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0056 27 716 Homeobox Transcription Factor Family AT4G04890 55.274 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr5g0056 START 3e-42 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0056 K09338 - vvi:100264009 771.155