Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0055 ATGTCAAACAAATGGATATGTCAATTGTTATCATTAGCAACATTGTTGATTTCATACAATGTCTATGTGTGTGAATGTCAAGAACCTGAGGCTCTCCCTCCGTCAGCTGAAAATTGTAATGGAGTTTTCATTTCGTATGATTTTCTTGATCGGAGGAAGGGATTTCCTCGGGTCAAGAATGTCACGGCACAATCTTGGTCCTTTAATGCAACCGCAACAGTTCTCAACACAGGAAAAGATGTACTTAAAGCATGGAAATTGTTCATAGGATTTCAACATCATGAGATCCTTGTCTCTGCAAATGGAGGTATTCCATTTGAAGCTGGTGACTTTCCCTCTTCTGTTGGAAATGGGACAACCTTAGTAGGAAGTTCTCTTCCAGATTTGGAAACCTCCATCGACACAGCCAATGATTTGTCTCAAATTCAAGCACTCATTCAAATTGCTGGCACCCAATTTGGAGTTAGGCCACCTGCAATTCCCATGCCTAAAAACATCAAGTTGGTGAATGATGGATTTAAGTGCCCCCGACCAAGTGTCCGTAAGAGTTCCATGTGGGCATGTTGTAAAAGTGATCCAAAATTCAAGTCAAAACTTTTGAAGACAAAATTCTTACCACGTCAAAAAGGGGATCTGACCATAGCCTATGATGTTCTTCAATCGTATGACAGCAGCTATCTAGTTCAAGTGACCATAGATAATAATAACCCTTTGGGAAGGTTAGATCATTGGAACTTAACATGGGAGTGGACAAGAGGTGAATTCATACAAACAATGAAAGGTGCTTTCACACGTGAGATAACCTACACAGGTTGCGTCTATGGTGTTGCTGGACAATACTACAAGGACATGGATTTCTCCAAAGTAATTAATTGTCAAAAAAATCCTGTAATAAGTGATTTGCCTCCAGAAAAATATAATGACACTGAAATTGGTAAAATACCATTTTGTTGTAGAAATGGAACTCTTTTACCAATACTTATGGATCCAAGCCAATCCAAGTCAATTTTTCAAATGCAAGTTTTTAAATGTCCACCTGATTTGGATAAAAAATCTATTTTCCCACCAGCAAGATGGAAAATAATGGGAGTTCTTAACTCAGCTTATACTTGTGGACCACCATTGAAAGTTGAACCGACAAAATTTCCAGACCCTAGAGGACTTGATGCTACAACTTATTCTATTGTTAGTTGGCAAATAGTTTGTAATATAACCAAACCAAAACATAGGAGTACACGTTGCTGTGTCTCTTTCTCTTCTTATTACAATGATTCTATTGTGCCATGCAACACGTGTGCATGTGGTTGTGATGATGATGACACAAATCGTCATTGTAATCCAAATGCAAGAGCAATGCTTTTACCTTCAGAAGCTCTTCTTGTACCTTTCGAGAATAGAACATTGAAGACAGTTGCTTGGGCGAAATTAAAGCATTTTAGGGTACCTAAGAAATTACCATGTGGTGATAATTGTGGAGTTAGCATAAATTGGCATATAGTTTCAGATTACAAAGGTGGATGGAGTGCTAGAATCACTTTGTTCAATTGGAAACCATTCCCTTTTGAGAATTGGTTCACTGCAATGCAATTTAAGAAAAGTGTTTCTCTTGGTTTTGAGAAAGTGTATTCTTTCAATGGGTCATTGCTTACAAAATTCAACAACACTATTTTCATGCAAGGATTACAAGGAACAAGCTATTTGATAGGTGAAGACAATGGAACATACCTAAAGGTTCCTGGAAAACAACAATCTGTTATTTCCTTTACCAAAAAATTCAAACCGAATATGCAAATAGCAAAAGGAGATGGGTTCCCTTCAAAGGTTCTTTTCAATGGAGAAGAGTGTTCAATTCCAACCCAATTCCCTATGCAAACTGCTAACCAGCAAAATGTATATTTAGTACAAGAAATATTAGTCTTAGTTTTAGCTTTTACAATGAATCATATCTTGTATTAG 1956 0.3722 MSNKWICQLLSLATLLISYNVYVCECQEPEALPPSAENCNGVFISYDFLDRRKGFPRVKNVTAQSWSFNATATVLNTGKDVLKAWKLFIGFQHHEILVSANGGIPFEAGDFPSSVGNGTTLVGSSLPDLETSIDTANDLSQIQALIQIAGTQFGVRPPAIPMPKNIKLVNDGFKCPRPSVRKSSMWACCKSDPKFKSKLLKTKFLPRQKGDLTIAYDVLQSYDSSYLVQVTIDNNNPLGRLDHWNLTWEWTRGEFIQTMKGAFTREITYTGCVYGVAGQYYKDMDFSKVINCQKNPVISDLPPEKYNDTEIGKIPFCCRNGTLLPILMDPSQSKSIFQMQVFKCPPDLDKKSIFPPARWKIMGVLNSAYTCGPPLKVEPTKFPDPRGLDATTYSIVSWQIVCNITKPKHRSTRCCVSFSSYYNDSIVPCNTCACGCDDDDTNRHCNPNARAMLLPSEALLVPFENRTLKTVAWAKLKHFRVPKKLPCGDNCGVSINWHIVSDYKGGWSARITLFNWKPFPFENWFTAMQFKKSVSLGFEKVYSFNGSLLTKFNNTIFMQGLQGTSYLIGEDNGTYLKVPGKQQSVISFTKKFKPNMQIAKGDGFPSKVLFNGEECSIPTQFPMQTANQQNVYLVQEILVLVLAFTMNHILY* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0055 651 PANTHER COBRA-LIKE PROTEIN 7 7 648 - -
Mtr5g0055 651 Pfam COBRA-like protein 226 405 IPR006918 GO:0010215|GO:0031225
Mtr5g0055 651 PANTHER COBRA-LIKE PROTEIN 7 7 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0055 Mtr-Chr5 529278 532092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0055 33 646 COBRA Gene Family AT3G20580 58.293 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0055 - - mtr:MTR_5g005590 1334.7