Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0050 ATGGACAAAGATAAAATGTCTTCAACTATGATTATGTTAATCATCATTTTAATGTTGCATGTTGTTTCTTGTACAGACCATCTTATTATAGATACTTACTGTCCAGATAATTTCCCATTTTACACTTCCAACACTTCATTCCATAAGAATCTCAAGCTTCTCATGGAAACTCTCTCCTCCAATATAGCAGCTTCAAACACAAGTTACTTCAACAACACATCAATAGGACAAGGACTAGACAAAGTGTATGGACAGGCACTATGCAGAGGAGACATAACAAACTCCACAGTTTGCAAAGAATGCATTGAGAAAGCAAGCAAAGATTTAATGAATAGGTGTAAGAGTGAGGATGCAATGGTATGGTATGAACTTTGTCAAGTTCGGTACTCGTTTCAGATGTTTTTTTCAGACGCGGTTTATACTGGAAAATATCCTAAGCAGAATGATCTAGAGAAGCGCGTTTCGGATCCTACTAGTTTCCAACAAGTGTTGACTTATTTAATGAACAATCTTTCAAATGAGGCTGCTTTTAATCCTGCTAAGAATATGTTTGCAACTGCAGAAATTGAATTTTCTGCGAAGAAGGAAAGAATTTATGGACTTGTGGAATGTACTAAGGACGTTTCTGAAACGGACTGCGGAAGTTGTTTGAGTTCTGCAGTCACAGAACTCAATGCATGCTGCTCATACAGGGAAGGAGGGATTATTGTTAGTCGAAATTGCAACGTTAGGTTCGATCTCTTTCAGTTTTTTAATGCTTCATCAGCAGCATCCCTTTTGATTTTTCCAACTTCCAAAGGAGGGAAATGGAAGCCTTGGATGTATGTGTTAACTATATGCGGCTCAATTTCGATATTGGCAGTTCTTATTGGGTTGTGCACTGCTTGCCGCCGGCAGAAAAATGATAGAGACAAAGACGAAGAAAGAAGCGAAAGGATGCTATTTCAAGAATTGTCTAGCCCCAAAAATGTAGCAATCACACAAGAAGGTGAGTTGATTAGTTCTGATCAACTGTTGTTCATGACTTTAGCAACCATTAAGGCGGGTACCGATGACTTTTCTAATACAAATAAGCTTGGACAAGGAGGGTTTGGTGCCGTCTACAAGGGTGTTCTACCAGATGGTAATGAAATAGCTGTAAAAAGATTGTCAAAAAAGTCTTGGCAAGGCATAGAGGAATTCAAAAATGAGATCATTCTAATAGCTAAACTTCAACACAAGAATTTGGTTAAATTGTTGGGATGTGTCTTAGAAGGAGAGGAAAAGATACTCGTATATGAATTCATGTCAAATAGAAGCCTTGATCAATTTATATTTGATCCAAACAAACGTCCTAAACTTGATTGGAAGACATGTTATGGCATCATTGGCGGCATAGCGAGAGGACTACTTTATCTGCATGAGGAGTCTCGGCTTAAAATCATTCACCGAGACCTAAAGCCAAACAATGTGTTGTTAGACCATGAACTAGTAGCAAAAATATCAGATTTTGGTATGGCGAGGATGTTTTCTGAGAATCAGAATACAGCAAACACAAAAAGAGTGGTGGGAACACATGGATATATGGCTCCAGAATATGCAATGGAAGGACTATTCTCCGTGAAATCTGATGTCTTCAGCTTCGGCGTAATCATGCTTGAAATCATCAGTGGGAAAAGAAATGGCGGCTTTTACCTAACCGAACTTGCCCCGACTCTGCTAGCATATGCTTGGAAGCTGTGGAATGAAGGAAAAGGATTAGAATTTGCAGATCCTATATTATTGGAATCATGTCTTGATTATGAGTCTGAAGTTCTTAGGTGCATTCATATTGGGCTCTTGTGTGTGCAGGAAGATCCACAACATAGGCCGACCATGTCAAATGTTGTGGTTCTATTGGGAAGTGAATCAATGGTTCTTCCTCAACCGAGACAACCAGCATTCTCTTCGGGTAAGATGATTCGCGTAGATCCATCTGCATCAACAAATTGTTCATTGAATGATAGTATATGGTCTAATATTTCACCACGATGA 2013 0.3895 MDKDKMSSTMIMLIIILMLHVVSCTDHLIIDTYCPDNFPFYTSNTSFHKNLKLLMETLSSNIAASNTSYFNNTSIGQGLDKVYGQALCRGDITNSTVCKECIEKASKDLMNRCKSEDAMVWYELCQVRYSFQMFFSDAVYTGKYPKQNDLEKRVSDPTSFQQVLTYLMNNLSNEAAFNPAKNMFATAEIEFSAKKERIYGLVECTKDVSETDCGSCLSSAVTELNACCSYREGGIIVSRNCNVRFDLFQFFNASSAASLLIFPTSKGGKWKPWMYVLTICGSISILAVLIGLCTACRRQKNDRDKDEERSERMLFQELSSPKNVAITQEGELISSDQLLFMTLATIKAGTDDFSNTNKLGQGGFGAVYKGVLPDGNEIAVKRLSKKSWQGIEEFKNEIILIAKLQHKNLVKLLGCVLEGEEKILVYEFMSNRSLDQFIFDPNKRPKLDWKTCYGIIGGIARGLLYLHEESRLKIIHRDLKPNNVLLDHELVAKISDFGMARMFSENQNTANTKRVVGTHGYMAPEYAMEGLFSVKSDVFSFGVIMLEIISGKRNGGFYLTELAPTLLAYAWKLWNEGKGLEFADPILLESCLDYESEVLRCIHIGLLCVQEDPQHRPTMSNVVVLLGSESMVLPQPRQPAFSSGKMIRVDPSASTNCSLNDSIWSNISPR* 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0050 670 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 10 669 - -
Mtr5g0050 670 SUPERFAMILY Protein kinase-like (PK-like) 334 625 IPR011009 -
Mtr5g0050 670 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 10 669 - -
Mtr5g0050 670 Gene3D Transferase(Phosphotransferase) domain 1 429 632 - -
Mtr5g0050 670 ProSiteProfiles Protein kinase domain profile. 353 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0050 670 Pfam Salt stress response/antifungal 155 246 IPR002902 -
Mtr5g0050 670 Pfam Salt stress response/antifungal 39 131 IPR002902 -
Mtr5g0050 670 Gene3D - 28 134 IPR038408 -
Mtr5g0050 670 Gene3D - 145 250 IPR038408 -
Mtr5g0050 670 Pfam Protein tyrosine and serine/threonine kinase 356 624 IPR001245 GO:0004672|GO:0006468
Mtr5g0050 670 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Mtr5g0050 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Mtr5g0050 670 CDD STKc_IRAK 359 623 - -
Mtr5g0050 670 ProSiteProfiles Gnk2-homologous domain profile. 142 250 IPR002902 -
Mtr5g0050 670 Gene3D Phosphorylase Kinase; domain 1 316 428 - -
Mtr5g0050 670 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Mtr5g0050 670 SMART serkin_6 353 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0050 Mtr-Chr5 495783 498881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0050 30 641 Receptor kinase-like Gene Family AT4G23230 42.766 7.55e-170 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr5g0050 PK_Tyr_Ser-Thr 6.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0050 - - gmx:102669229 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0050 5 495783 498881 Mtr1g3980 1 51454170 51457941 PCT