Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0049 ATGATTACTACTTCCTCAAAACAAATCTGGTCGTACGTAGTTTCCATCCTCTATCTAACCTTATTAGCAACAGAAGCATCTCCAACATATCTAGGCTCTTACTGCAACGACAACACAACATACACACCAAACAGCACACTATCTACAAACCTCAATGTCCTCCTCAATTCTCTTTCAACCAACTCTTCTCAACAACAAGATGGTTACTACATGACCATCATGGGTTTTGGAACAACCAACGCTGTTAACGGAATCTTTCTCTGTCGTGGTGATGTCAACACAACAACTTGTCAAAACTGTGTTACTGACGCGGCTACACAGATCAAACGACGTTGTACAAATCAAACAGAAGCTATTATTTGGTATGAAGAATGTCTTCTTCGTTACACTAACAAATTTTTTAGATATTACAGTATTGAACCTAGGTTAAATCCTAAAAATGGTAAAAATGTTTCTGGTGTTGACTTTGAACGGTTCAATGAAACGGTGTTTGGGTTGTTGAATGAGTTGGTGGTTACGGCGGCGAATTCAAGGACGGCGAAGAAATTTGGTACCGGAGAAGTGGAAGTGACGAGAAGCATGAAGGTTTATGGATCAGGACAGTGTAGTACGGATTTGACAAGTTCTCAATGTGAGATTTGTTTAAGAAATGCGATTGGAACATTGCCAAAGTGTTGCAGTGGACGAGAGGGTGCAAGTGCTTTGCTTGCTTCTTGTATTGTTAGATATCAACTCTACCCGTTTTACAACTTATATGGTTCTTCTTCTTCTTCTTCAGGAAGAAATGGAGTTGGAACAAAAGCAATTGTCATAATTATTTCCCTGGCCATTGTTCCTGTATTACTTTTCTTTATAGGCTGCTATTACAAACGGAGAAGATCAAGGCAGAGACGTAGGACAATGCTAAGGGAAAATTTTGGGGATGAACTTAAAACACTAGACTCCTTACAATTCAAGTTTTCTACAATTGAAGCTGCCACCAACAAATTTTCAAGTGAGAACGAGATAGGCAAAGGAGGATTTGGTATTGTCTACAAGGGTGTTCTTTCTGATGGACAACAAATAGCAGTAAAGAAACTCTCAAGAAGTTCAGGACAAGGTTCTATAGAATTTCAAAATGAAATTTTACTAATAGCCAAGCTTCAACATAGAAATTTGGTGACTTTACTAGGATTCTGCTTGGAAGAACGAGAAAAAATGCTTATATATGAATATGTGCCTAATAAGAGTCTTGATTATTTCCTATTTGATTCCAAAAAGCATAGAGTGCTACATTGGTTTGAGCGTTATAAAATTATTGGAGGAATTGCACGAGGAATTCTTTACTTACATGAGTATTCAAGACTTAAAGTCATACATCGAGATCTCAAACCTAGCAATGTATTGTTAGATGACAAAATGAATCCAAAAATATCAGATTTTGGTTTGGCAAGAATAGTTGCAATCGATCAAGAACAAGGAAGCAGTACAAATAGAATTGTGGGAACATATGGTTATATGTCTCCGGAATATGCAATGCACGGACAATTTTCTGAGAAATCCGATGTGTTCAGTTTTGGAGTTATAATTCTTGAGATAGTTAGTGGAAAGAGAAATAGTCGTCCCATTCAATCACACGATTTTGAGGATATCCTAAGAACTGCTTGGAGACTATGGAGGAATCAAACGCCATTAGAAATGTTGGACCCTATTCTAAAAGACATGTTTTCTCATAGTGAAGTTATTAAATGCATTCAGCTTGGTTTATTATGTGTTCAAGAAAATCCTGATGATAGACCTACAATGGCACAAGCTGTTTCATATCTCAGTAGTCTTTTAGTTGAATTGCCACTTCCTCTAGAGCCAGCATTTTCCATGGATAGAGATATGAAGTTAAACATACCAACAACAGAGTCTAGTTCTGGCCAATTTATCAGTAACTCCACGGCATCCTCAATCAATGACTTAACTAAGAGTCAATTTTTCCCTCGATAG 1974 0.3734 MITTSSKQIWSYVVSILYLTLLATEASPTYLGSYCNDNTTYTPNSTLSTNLNVLLNSLSTNSSQQQDGYYMTIMGFGTTNAVNGIFLCRGDVNTTTCQNCVTDAATQIKRRCTNQTEAIIWYEECLLRYTNKFFRYYSIEPRLNPKNGKNVSGVDFERFNETVFGLLNELVVTAANSRTAKKFGTGEVEVTRSMKVYGSGQCSTDLTSSQCEICLRNAIGTLPKCCSGREGASALLASCIVRYQLYPFYNLYGSSSSSSGRNGVGTKAIVIIISLAIVPVLLFFIGCYYKRRRSRQRRRTMLRENFGDELKTLDSLQFKFSTIEAATNKFSSENEIGKGGFGIVYKGVLSDGQQIAVKKLSRSSGQGSIEFQNEILLIAKLQHRNLVTLLGFCLEEREKMLIYEYVPNKSLDYFLFDSKKHRVLHWFERYKIIGGIARGILYLHEYSRLKVIHRDLKPSNVLLDDKMNPKISDFGLARIVAIDQEQGSSTNRIVGTYGYMSPEYAMHGQFSEKSDVFSFGVIILEIVSGKRNSRPIQSHDFEDILRTAWRLWRNQTPLEMLDPILKDMFSHSEVIKCIQLGLLCVQENPDDRPTMAQAVSYLSSLLVELPLPLEPAFSMDRDMKLNIPTTESSSGQFISNSTASSINDLTKSQFFPR* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0049 657 SMART serkin_6 330 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0049 657 CDD STKc_IRAK 336 602 - -
Mtr5g0049 657 Gene3D - 144 248 IPR038408 -
Mtr5g0049 657 Gene3D - 27 134 IPR038408 -
Mtr5g0049 657 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 14 657 - -
Mtr5g0049 657 Pfam Protein kinase domain 331 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0049 657 SUPERFAMILY Protein kinase-like (PK-like) 316 625 IPR011009 -
Mtr5g0049 657 ProSiteProfiles Gnk2-homologous domain profile. 29 134 IPR002902 -
Mtr5g0049 657 ProSitePatterns Protein kinases ATP-binding region signature. 336 359 IPR017441 GO:0005524
Mtr5g0049 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Mtr5g0049 657 ProSiteProfiles Protein kinase domain profile. 330 606 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr5g0049 657 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 657 - -
Mtr5g0049 657 Gene3D Phosphorylase Kinase; domain 1 290 405 - -
Mtr5g0049 657 Pfam Salt stress response/antifungal 157 245 IPR002902 -
Mtr5g0049 657 Pfam Salt stress response/antifungal 35 131 IPR002902 -
Mtr5g0049 657 Gene3D Transferase(Phosphotransferase) domain 1 406 609 - -
Mtr5g0049 657 ProSiteProfiles Gnk2-homologous domain profile. 139 248 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0049 Mtr-Chr5 482691 488106 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0049 17 657 Receptor kinase-like Gene Family AT4G05200 43.928 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr5g0049 Pkinase 8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0049 - - cam:101500396 1009.59