Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0028 ATGGAACCTACTGGTCTTATTTCTCAAGAATGGACTTCTCTTAGTGGACTCTACACTGCTGAGGAATCTGACTTTATGAACCAGTTACTTGGTAACTCCTCATTCTCACAACATTTCTATCAAAATTCCAATTTCGGAACTGAAACTACATTTTGGCCACCATATGATTCCACAATAGTTACTGCACAAGTTCCTAGCTCAACCTCTGATACTAGTAACCTCTTCCCCACAACAAGTTGTTTCAACAACAATCCAGTAACCACTTTTGACTATATTTCCATGGGTCTTTCCATAGATTATTCCAAATTCACTCCATGTACAACACAATCTGATGAACAAGTTCTAGCTAACAAAAATTTGCAGGCCCGAAAAACGGAACGTGAAATACTAGTTTCTGAACCAGAAGAGGATAAAACCACAAGCACAGAAAATTCAGGAAAAAGATCTAGGAGCTCAAATGAGGTCCCAAAGAACAAGAGGAATGTTAAATGTAGGAAGATGATTAGGTGTGCTTCTATAAGCACTGAAGAGAATACAAGTACTGGTTCTCAGGATCAGACCTTAAGCGGTTATTGTTCAGAGGATGAGTCCAATTCTTCTCATGAGCCACGTGGAAGGGAATCTTCTAGTTTGAGCCTGAATGATTCTGCAGCTAAATTAAGTGGAAAATCAAGATCTAGTAGAGGTCCTGCTACTGATCCACAGAGCCTCTATGCAAGAAAAAGAAGAGAAAGAATAAATGAAAGGTTGAAAATCCTACAAAACCTTGTCCCCAATGGAACTAAGGTGGATATCAGCACCATGCTTGAGGAAGCTGTCCAATATGTGAAATTTTTACAACTTCAAATTAAGCTTCTAAGCTCTGATGACACGTGGATGTACTCTCCCATTGCTTACAATGGAATGAACATTGGACTTGAACTTGGTATTACCCCAACAAAAGTAACAAAGGATATGCATAACAACATACCAATAAAAGAGAATGCAGCACTTTAA 996 0.3865 MEPTGLISQEWTSLSGLYTAEESDFMNQLLGNSSFSQHFYQNSNFGTETTFWPPYDSTIVTAQVPSSTSDTSNLFPTTSCFNNNPVTTFDYISMGLSIDYSKFTPCTTQSDEQVLANKNLQARKTEREILVSEPEEDKTTSTENSGKRSRSSNEVPKNKRNVKCRKMIRCASISTEENTSTGSQDQTLSGYCSEDESNSSHEPRGRESSSLSLNDSAAKLSGKSRSSRGPATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDTWMYSPIAYNGMNIGLELGITPTKVTKDMHNNIPIKENAAL* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0028 331 MobiDBLite consensus disorder prediction 125 160 - -
Mtr5g0028 331 MobiDBLite consensus disorder prediction 204 233 - -
Mtr5g0028 331 MobiDBLite consensus disorder prediction 175 242 - -
Mtr5g0028 331 CDD bHLH_AtIND_like 231 293 - -
Mtr5g0028 331 Gene3D - 234 288 IPR036638 GO:0046983
Mtr5g0028 331 Pfam Helix-loop-helix DNA-binding domain 240 280 IPR011598 GO:0046983
Mtr5g0028 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 295 IPR036638 GO:0046983
Mtr5g0028 331 SMART finulus 236 285 IPR011598 GO:0046983
Mtr5g0028 331 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 312 - -
Mtr5g0028 331 MobiDBLite consensus disorder prediction 175 196 - -
Mtr5g0028 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
Mtr5g0028 331 PANTHER TRANSCRIPTION FACTOR BHLH54 33 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0028 Mtr-Chr5 289818 291822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0028 1 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G33880 40.227 3.75e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr5g0028 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0028 - - mtr:MTR_5g005110 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0028 5 289818 291822 Mtr1g4024 1 51842095 51843943 PCT