Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0027 ATGGCAACAACAACAACAACAACAGTGGTATCCTCCGGTCGAGAATTAACAAACCCTCCGTCAGACGGAATCTCAAACATTCGATTCTCAAACCACAGTGATCATCTTCTTGTCTCCTCTTGGGACAAAACTGTTCGTCTTTATGATGCAACCGCAGATTTTCTTAGAGGTGAGTTCCTTCACGGCGGACCTGTTCTTGACTGTTGCTTTCATGATGACTCTTCTGGTTTCAGTGCCTCCGCCGATAACACTGTCAGACGCCTCATTTTCGCTACCGGTAAAGAGGATATTTTGGGAAAGCATGATGCTCCTGTTCGTTGTGTTGAGTACTCTTACGCCGCAGGGCAATTGATCACTGGAAGTTGGGACAAAACCATAAAATGTTGGGACCCTAGAGGTGCAAGTGGACAAGAGCGCACTCTAGTTGGGACGTATGCACAGCCTGAACGTGTTTACTCTCTATCTCTTGTTGGACATCGGCTTGTAGTAGCAACAGCTGGAAGACACGTTAATGTTTATGACATGAGGAACATGTCTTGTCCTGAACAACGAAGGGAATCTTCATTGAAATATCAAACCAGATGTGTACGCTGCTACCCAAATGGAACAGGATATGCTCTTAGTTCTGTTGAAGGGCGGGTTGCAATGGAATTCTTTGACCTATCTGAGGCTAGCCAGGCAAAGAAATACGCTTTCAAGTGTCATAGAAAATCTGAAGCTGGAAGGGATATCGTCTATCCTGTGAATGCCATGGCATTCCACCCCATATATGGTACATTTGCCACAGGAGGTTGTGACGGTTTTGTTAACGTCTGGGACGGAAACAACAAAAAGAGGCTATACCAGTATTCAAAATATCCTAGTAGCGTTGCTGCACTCTCGTTTAGCAGAGATGGACGCCTCCTAGCTGTTGCATCAAGTTACACTTTTGAAGAGGGACCTAAACCCCATGACCAAGATGCTATCTACGTTCGCAGTGTGAACGAGATTGAAGTCAAGCCAAAACCCAAAGCCCTTCCCAATCCTACAGCGTGA 1035 0.457 MATTTTTTVVSSGRELTNPPSDGISNIRFSNHSDHLLVSSWDKTVRLYDATADFLRGEFLHGGPVLDCCFHDDSSGFSASADNTVRRLIFATGKEDILGKHDAPVRCVEYSYAAGQLITGSWDKTIKCWDPRGASGQERTLVGTYAQPERVYSLSLVGHRLVVATAGRHVNVYDMRNMSCPEQRRESSLKYQTRCVRCYPNGTGYALSSVEGRVAMEFFDLSEASQAKKYAFKCHRKSEAGRDIVYPVNAMAFHPIYGTFATGGCDGFVNVWDGNNKKRLYQYSKYPSSVAALSFSRDGRLLAVASSYTFEEGPKPHDQDAIYVRSVNEIEVKPKPKALPNPTA* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0027 344 MobiDBLite consensus disorder prediction 1 24 - -
Mtr5g0027 344 Pfam WD domain, G-beta repeat 98 130 IPR001680 GO:0005515
Mtr5g0027 344 Pfam WD domain, G-beta repeat 232 273 IPR001680 GO:0005515
Mtr5g0027 344 Pfam WD domain, G-beta repeat 22 49 IPR001680 GO:0005515
Mtr5g0027 344 PANTHER MRNA EXPORT FACTOR AND BUB3 7 339 - -
Mtr5g0027 344 PANTHER MITOTIC CHECKPOINT PROTEIN BUB3.2 7 339 - -
Mtr5g0027 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 98 130 - -
Mtr5g0027 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 282 IPR001680 GO:0005515
Mtr5g0027 344 Gene3D - 2 338 IPR015943 GO:0005515
Mtr5g0027 344 SMART WD40_4 91 130 IPR001680 GO:0005515
Mtr5g0027 344 SMART WD40_4 225 273 IPR001680 GO:0005515
Mtr5g0027 344 SMART WD40_4 52 89 IPR001680 GO:0005515
Mtr5g0027 344 SMART WD40_4 11 49 IPR001680 GO:0005515
Mtr5g0027 344 SMART WD40_4 276 326 IPR001680 GO:0005515
Mtr5g0027 344 SMART WD40_4 138 174 IPR001680 GO:0005515
Mtr5g0027 344 PRINTS G protein beta WD-40 repeat signature 36 50 IPR020472 -
Mtr5g0027 344 PRINTS G protein beta WD-40 repeat signature 117 131 IPR020472 -
Mtr5g0027 344 PRINTS G protein beta WD-40 repeat signature 260 274 IPR020472 -
Mtr5g0027 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 130 IPR001680 GO:0005515
Mtr5g0027 344 SUPERFAMILY WD40 repeat-like 19 307 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0027 Mtr-Chr5 282456 285818 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0027 98 306 U-box Gene Family AT2G33340 26.047 9.14e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0027 K02180 - cit:102608840 642.499