Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0007 ATGTTGGAGGAAGACGAAGACGTAGTTTTGTTGTCATCGTCGTCTTTTTCTTCTGATTCCGATGAAGAAGTTGAAGTGTCATCGTCTTCTTCTTCTTCTTCTTCTTCTGATTCCGAAATTGAACAAGTTTCACAACGGAAATCTCAGAATGTAGAAGCCCTAATCAAAGGTAACCTTATTGTGAAGAGACAGTCGTTGCTGCCGAGAGTATATTCCACCAATGGAGCTGCCGCTATTTGCAGAAAACCGTTTAAACCACCGTCCGATGCTTACAACAATAACAATAATCAAGATCTTGCTCGTAGGCTCTCTGCTCGCAAAAGATTTGTCCCATGGGGTTCTACCACTCCTATTCCTATTCCCACCTCCACCACACCTTTGACGGAGTTGGATTTGAATATCTCTGATCACAAAGAGGAGGCTGTCAAACCCTCGCCGCCTTTGCCCCCTGAAATTGATCCTCTAATACTCTGGCAACCTCTTCACGACAACGACCCTTCTAATTCTAATTTCACAACAATAGCCGTTGATCCTTTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAATTCATGTTTGATTGTGTCGCCGGACTATGTGAGACACCCGATATCAATGGATGCATTTTGGCAGATGATATGGGTTTGGGGAAGACACTGCAGTCCATCACATTACTATATACTCTTATTTGTCAAGGTTTCGATGGGAAGCCTATGGTTAGAAAGGCCATCATTGTCACTCCTACCAGTCTCGTTAGCAATTGGGAAGCAGAAATTAAGAAGTGGGTTGGAGATAGAGTTCGCCTTGTTGCTCTTTGTGAAACCACAAGACAAGATGTTATCTCCGGGATTAACAGTTTTAAAAGTCCCCAAGGCAAATTCCAGGTGCTCATTGTTTCATACGAGACATTCCGAATGCATTCAGAGAAGTTTAGCTCTAGTGGCTCCTGTGATCTCCTCATCTGTGATGAGGCTCACAGACTGAAAAATGATCAGACAATAACAAACAAGGCATTGGCTGCTCTCCCGTGTAAACGTAGAGTTTTGCTGTCAGGAACTCCTTTGCAGAATGACTTGGAAGAATTCTTTGCAATGGTTAATTTTACCAATCCTGGAATATTGGGCGGCATTGCACATTTTCGACGTCACTTTGAGGCGCCAATAATTTGCGGAAGAGAACCTGCTGCTACTGCAGAAGAGAAGAAACTCGGTGCTGAACGCACTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGAAGGACTAATGCATTGCTATCAAATCACTTACCACCGAAGATAATTGAAGTTGTTTGCTGCAAGTTGACTCCGCTACAATCAGATCTATATAAACATTTTATACAGTCCAAAAATGTTAAACGGGCGATTACTGAAGAACTGAAGCATTCGAAGATTTTGGCCTACATTACGGCTCTAAAAAAGTTATGCAATCATCCAAAGCTCATATATGATACCATACGAAGTGGGAGCCCAGGAACTTCAGGTTTTGAGGACTGCATCCGATTCTTCCCTCCAAATATGTTATCTGGAAGGTCTGGATCATGGACAGGAGGGGATGGAGGCTGGGTTGAGCTTTCCGGTAAAATGCAAGTCTTGGCAAGGTTACTTCATCAATTACGCCAGAGAACAAATGATCGCATTGTCCTTGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGCCGGGAACGAAAGTACCCTCACTTGAGGCTTGATGGTGCTACATCAATCAGTAAAAGGCAAAAGTTGGTCAACTGCTTGAACGACCCGTCTAAGGACGAATTTGTTTTTCTCTTAAGCAGCAAGGCTGGTGGTTGTGGACTCAATTTGATTGGGGCAAATCGACTCGTCTTGTTTGATCCTGATTGGAATCCAGCAAATGATAAACAAGCCGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAAAGAGTTTACATTTATAGATTTTTGAGTGCCGGAACAATAGAAGAAAAGGTCTACCAGCGTCAGATGGCAAAAGAAGGGCTGCAAAAGGTCATTCAGAGGGAGCAAAACGACAGCGTCGCGGCACAGAGTAACTTTCTCTCGACAGAGGATCTTCGCAATTTGTTTACTTTTGATGAGAACGTCAAGTCAGAGATTCATGAAAATATGCGATGCAGTCGTTGCCAAAACAATGATGGGCCGCAAGACACTGATGTTTTATCAACAATGATTAATAGCGAATGTGGTGATGATGAAACCGCTGATATAGGTGGATTTGCTGAGATTGCAGGCTGCTTAGGGAATTTGAAAACATCAGAAAAGCAGGTAGGGAATCCATTAGAAGAAGATTTAAGTAGTTGGGGCCATCATTTATTCCCAACCTCTGTACCAGATGGCGTCCTTCAGGCTTCAGCCGGTGATGAGGTGACTTTTGTCTTCACAAACCAAGTTGATGGAAAGCTGGTACCGGTTGACTCCATAAGTCCCAAGCTACAGAAAAAGGAATTACACAAGCCAAGCCGCAACGTCGAGCGAAAATCCACCCCTTTTGCTTTACACAATAAGCTTGTACCACTACGTTCTGCATCCAATATTGCCAATGTGTCATGCTCATCTTCAATTGCTTGGACGAAGAAGGCAAAAAATTGTGAAAGAACTACTCAAAATATCGCCATGAGTGTAGCATTAAACACCAAACACTCTCTTGTAAATGAATTACCAAGACAGAAAAGATCATACCCTGCTGATTCCAATGATGGCCACTCTTTTGTAAATCAAATATCACCGAAAAAAGCATGTCATGTTGATAACAATGATGAAAATTTTGAGTAA 2838 0.426 MLEEDEDVVLLSSSSFSSDSDEEVEVSSSSSSSSSSDSEIEQVSQRKSQNVEALIKGNLIVKRQSLLPRVYSTNGAAAICRKPFKPPSDAYNNNNNQDLARRLSARKRFVPWGSTTPIPIPTSTTPLTELDLNISDHKEEAVKPSPPLPPEIDPLILWQPLHDNDPSNSNFTTIAVDPLLVRFLRPHQREGVQFMFDCVAGLCETPDINGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGDRVRLVALCETTRQDVISGINSFKSPQGKFQVLIVSYETFRMHSEKFSSSGSCDLLICDEAHRLKNDQTITNKALAALPCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGGIAHFRRHFEAPIICGREPAATAEEKKLGAERTAELSAKVNQFILRRTNALLSNHLPPKIIEVVCCKLTPLQSDLYKHFIQSKNVKRAITEELKHSKILAYITALKKLCNHPKLIYDTIRSGSPGTSGFEDCIRFFPPNMLSGRSGSWTGGDGGWVELSGKMQVLARLLHQLRQRTNDRIVLVSNYTQTLDLFAQLCRERKYPHLRLDGATSISKRQKLVNCLNDPSKDEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMAKEGLQKVIQREQNDSVAAQSNFLSTEDLRNLFTFDENVKSEIHENMRCSRCQNNDGPQDTDVLSTMINSECGDDETADIGGFAEIAGCLGNLKTSEKQVGNPLEEDLSSWGHHLFPTSVPDGVLQASAGDEVTFVFTNQVDGKLVPVDSISPKLQKKELHKPSRNVERKSTPFALHNKLVPLRSASNIANVSCSSSIAWTKKAKNCERTTQNIAMSVALNTKHSLVNELPRQKRSYPADSNDGHSFVNQISPKKACHVDNNDENFE* 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0007 945 MobiDBLite consensus disorder prediction 912 945 - -
Mtr5g0007 945 Pfam SNF2-related domain 187 493 IPR000330 GO:0005524|GO:0140658
Mtr5g0007 945 SMART helicmild6 569 653 IPR001650 -
Mtr5g0007 945 MobiDBLite consensus disorder prediction 1 48 - -
Mtr5g0007 945 Pfam Helicase conserved C-terminal domain 543 652 IPR001650 -
Mtr5g0007 945 Gene3D - 425 734 IPR027417 -
Mtr5g0007 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 425 IPR027417 -
Mtr5g0007 945 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 202 375 IPR014001 -
Mtr5g0007 945 CDD DEXHc_RAD54 184 425 - -
Mtr5g0007 945 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 20 883 - -
Mtr5g0007 945 MobiDBLite consensus disorder prediction 10 48 - -
Mtr5g0007 945 Gene3D - 158 424 IPR038718 -
Mtr5g0007 945 Gene3D - 447 716 - -
Mtr5g0007 945 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 429 732 IPR027417 -
Mtr5g0007 945 CDD SF2_C_SNF 536 664 - -
Mtr5g0007 945 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 542 703 IPR001650 -
Mtr5g0007 945 PANTHER SNF2/RAD54 FAMILY MEMBER 20 883 - -
Mtr5g0007 945 SMART ultradead3 180 383 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0007 Mtr-Chr5 105967 115583 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr5g0007 210 673 RAD5 or RAD16-like Gene Family AT3G16600 24.670 9.08e-25 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mtr5g0007 SNF2_N 1.5e-53 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0007 K10875 - gmx:100781631 1338.55