Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g5052 ATGGATGCTAAAATTATTGAAGTGTTTGAGGATGGGGATGCAAATTCTTCAAATGTCAAGGTTGGACAGTGTGAGAAAAAGTCTTTGGGGAAAATATGCAGCAGAGATCAGAGACACAACAAGAAAAAGAACACAACAAGAAAAGGAAGAAGTGTTTGGCTTGGAACATTTGACAGTGCTGAGGATGCTGCTTTAGCTTACGATCAAGCTGCATTTTCATTGAGAGGTAATAATGTTGTGCTCAATTTTTCTGTTCAAAGGGTCAAAGGATATTTGCAAGAGATTCAATATGATTGCAGAGAAGAGTTTTCACAAGGAGAGACACTGTGA 330 0.3818 MDAKIIEVFEDGDANSSNVKVGQCEKKSLGKICSRDQRHNKKKNTTRKGRSVWLGTFDSAEDAALAYDQAAFSLRGNNVVLNFSVQRVKGYLQEIQYDCREEFSQGETL* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g5052 109 Pfam AP2 domain 40 76 IPR001471 GO:0003700|GO:0006355
Mtr4g5052 109 Gene3D AP2/ERF domain 25 86 IPR036955 GO:0003700|GO:0006355
Mtr4g5052 109 SMART rav1_2 41 90 IPR001471 GO:0003700|GO:0006355
Mtr4g5052 109 SUPERFAMILY DNA-binding domain 45 85 IPR016177 GO:0003677
Mtr4g5052 109 ProSiteProfiles AP2/ERF domain profile. 19 84 IPR001471 GO:0003700|GO:0006355
Mtr4g5052 109 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 44 90 - -
Mtr4g5052 109 PANTHER DNA-BINDING DOMAIN 44 90 IPR044808 GO:0003700|GO:0009873
Mtr4g5052 109 CDD AP2 48 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g5052 Mtr-Chr4 64708854 64709383 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g5052 43 97 AP2-EREBP Transcription Factor Family AT3G23240 63.636 2.85e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g5052 AP2 1.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g5052 K14516 - mtr:MTR_4g134870 103.605