Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g5049 ATGGAAATGGAAGACGATGGAAGGGACGTGGAGCATATGGGTAAGGAGGAAGATAGAATAATAATATCATCAAGATCTTCATCTGGCGGGTTGACGTTGAGAGAGCCTCTCCTTGTGAAGAATAACAACAGGCTCAATACTACCTCCCAGGTTGCCATTGTTGGAGCCAATGTTTGTCAAATTGAAAGTCTTGACTACGAGATTGTTGAGAATGATCTATTCAAGCAAGACCGGAGGCTTGGAGCAAAAGCCGAGATTGTGCAGTATGCCATCCTCAAATGGACTTTTGCACTTCTTATTGGTTTAGGCACAGGTCTTGTCGCCTTCTTCAATAACATTGGTGTTGAGAATATTGCTGGTTTCAAGCTTCTCCTCACCAACCATCTCATGCTTGACCACAAATATCATCAGGCCTTTGCACTATATGCTGGTTGTAACATGGTTTTAGCCATCGCTGCAGCAGCCCTGTGCGCCTATGTCGCCCCTGCAGCAGCCGGATCTGGCATACCTGAGGTCAAGGCATATCTTAATGGCGTTGATGCTCCTTCTATATTGGCTCCACCTACTCTCTTTGTAAAGATTTTTGGCTCAATTTTCGGGGTTGCAGCTGGTTTTGTTGTGGGTAAGGAAGGACCTATGGTGCATACTGGTGCTTGCATAGGAAATCTACTTGGACAAGGTGGTTCAAAAAAATATGGACTGACCTGGAAAGGGTTCAGATATTTTAAAAATGACAGAGATCGAAGGGATTTGATCACATGTGGTGCGGCTGCTGGTGTTGCTGGTGCCTTCCGTGCCCCAGTCGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCTTGGTGGAGAAGTGCTCTTATGTGGAGAACATTTTTTACTACAGCTGTAGTAGCTGTGGTGCTGAGAGGTTTTATGGAATATTGCAAGGGGGGAATTTGCGGTCTTTTTGGGGAAGGAGGTTTGATAATGTTTGATGTTAATTCAGTAAAGCCTGCATACAGCATACCTGATCTACTAGTAGTTATATTTCTTGGAGTTATTGGAGGTCTCTTGGGAAGCCTTTATAATTATCTTGTGGATAAGGTCCTTCGCACTTACAACATCATTAATGAGAAAGGCCCTATATTTAAAATAATACTTGTGATGATTATATCATTTTTGACCTCTTGCTGTTCATTTGGGGTTCCATGGCTATCAAAGTGCATCCCTTGTCCTCCTCATGTGGGGGATCAGTGCCCAACCGTAGGGCATTCTGGACACTACAAGAATTTCCAATGTCCTCCTAATCACTACAATGACCTCGCTTCTCTCTTTTTTACTACCAACGATGATGCTATCCGCAACCTCTTTATTGCTGGCTCTCACAAAAGATTCCAGCTCTCCAGTCTCCTGATATTCTTTGTGGCAATATACTTCCTTGGAATCATTACTTATGGCATCGCAATTCCCTCAGGGTTGTTTATTCCAGTGATACTAGCAGGGGCTTCATATGGGCGTGTTGCTGGAAGTCTGTTAAGTCCATTTACAGTTTTGGATGTGGGTTTGTTTGCACTTTTGGGTGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACTGTCTCTTTGTGTGTCATTCTTCTCGAACTTACTAACAACCTCCTCATGCTACCATTGGTCATGTTAGTTCTCCTCATCTCAAAGTCTGTGGCAGATTGTTTTAACAAAGGTGTTTATGATCAAATAGTGGAAATGAAGGGGTTGCCTTATTTGGAAGTGCATGCAGAACCGTACATGAGGCATTTAGTTGCCGGTGATGTTGTTTCTGGTCCACTGTTTACATTCTCTGGTATTGAAAAAGTGGGGAATATTGTGCACACTTTAAAGGTGACGCGACATAATGGGTTTCCTGTGATTGATGAGCCTCCATTCTTAGAAGCTCCAGAGTTATGTGGGTTGGTTTTGAGGTCTCATTTGCTTGTAATTCTTAAACATAAGGCATTTACGACGAGGCCAAACGAGAGGTCCTTGATTATGAACAAGCTGAGGGCACATGACTTTGGAAAGCCGGGTTCGGGGAAAGGGATAAGACTGGATGATTTAAAGATATCAGAGGAAGAGATGGAAATGTATGTTGATATGCATCATATTACCAACAAGTCATCGTATACAGTTGTGGAAACAATGTCTCTAGCTAAAACTGCAGTTCTTTTCCGTGAGCTTGGCCTCAGGCATTTGTTGGTGGTGCCAAAGACATCCGGAAGACCTCCAATTGTGGGGATCTTGACAAGGCACGACTTCATGTCCGAGCATATATTGGGACTATACCCCCACTGCAACTCCCGCAAGTAA 2328 0.4373 MEMEDDGRDVEHMGKEEDRIIISSRSSSGGLTLREPLLVKNNNRLNTTSQVAIVGANVCQIESLDYEIVENDLFKQDRRLGAKAEIVQYAILKWTFALLIGLGTGLVAFFNNIGVENIAGFKLLLTNHLMLDHKYHQAFALYAGCNMVLAIAAAALCAYVAPAAAGSGIPEVKAYLNGVDAPSILAPPTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIGNLLGQGGSKKYGLTWKGFRYFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALMWRTFFTTAVVAVVLRGFMEYCKGGICGLFGEGGLIMFDVNSVKPAYSIPDLLVVIFLGVIGGLLGSLYNYLVDKVLRTYNIINEKGPIFKIILVMIISFLTSCCSFGVPWLSKCIPCPPHVGDQCPTVGHSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGSHKRFQLSSLLIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYLEVHAEPYMRHLVAGDVVSGPLFTFSGIEKVGNIVHTLKVTRHNGFPVIDEPPFLEAPELCGLVLRSHLLVILKHKAFTTRPNERSLIMNKLRAHDFGKPGSGKGIRLDDLKISEEEMEMYVDMHHITNKSSYTVVETMSLAKTAVLFRELGLRHLLVVPKTSGRPPIVGILTRHDFMSEHILGLYPHCNSRK* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g5049 775 ProSiteProfiles CBS domain profile. 710 773 IPR000644 -
Mtr4g5049 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 25 774 - -
Mtr4g5049 775 Gene3D Clc chloride channel 85 584 - -
Mtr4g5049 775 SMART cbs_1 603 656 IPR000644 -
Mtr4g5049 775 SMART cbs_1 713 764 IPR000644 -
Mtr4g5049 775 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 25 774 - -
Mtr4g5049 775 SUPERFAMILY Clc chloride channel 78 585 IPR014743 -
Mtr4g5049 775 Pfam Voltage gated chloride channel 150 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr4g5049 775 CDD ClC_6_like 62 583 - -
Mtr4g5049 775 SUPERFAMILY CBS-domain pair 587 761 IPR046342 -
Mtr4g5049 775 Gene3D - 585 765 IPR046342 -
Mtr4g5049 775 CDD CBS_pair_voltage-gated_CLC_euk_bac 586 762 - -
Mtr4g5049 775 PRINTS Chloride channel signature 162 179 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr4g5049 775 PRINTS Chloride channel signature 193 212 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr4g5049 775 PRINTS Chloride channel signature 257 276 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr4g5049 775 PRINTS Chloride channel signature 482 502 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr4g5049 775 PRINTS Chloride channel signature 514 530 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr4g5049 775 PRINTS Chloride channel signature 532 551 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr4g5049 775 PRINTS Chloride channel signature 570 584 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr4g5049 775 Pfam CBS domain 710 761 IPR000644 -
Mtr4g5049 775 PRINTS Plant CLC chloride channel signature 67 75 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr4g5049 775 PRINTS Plant CLC chloride channel signature 278 286 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr4g5049 775 PRINTS Plant CLC chloride channel signature 292 302 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr4g5049 775 PRINTS Plant CLC chloride channel signature 310 317 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr4g5049 775 PRINTS Plant CLC chloride channel signature 434 450 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g5049 Mtr-Chr4 64638590 64642954 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g5049 4 775 Ion Channels AT5G49890 73.650 0.0 1106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g5049 K05016 - jre:108988922 1139.02