Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g5040 ATGGAACTTTCCAGCAGCCAAGATGGAGAAATCCCAATAAACCACAATAATAATAATAATAATAATAATAATAATTATGGTACTAATGGACATGGTCATCACATGATTCACCATCATCATGTTCATGAACACCCTCCTCATCCTCTTCCACTACACCACAACCACAGTAATATCATTATATCATCATCTTCTTCAGCCGCAGTAGTGGCAGTAGTACCCCAAAACCCTTCAGTTAATGGCACAACCACCCCTATGCAAGCAGCAGCTGTTAGTACTGGTGTGGAATTAGATCATGATCATTCCTCCTACAAGAAATCGTCATCAGTTGTTGTGAGGTACAGAGAATGCCTAAAGAACCATGCAGCTGCAATGGGAGGGAATGCTACAGATGGCTGTGGTGAGTTCATGCCCAGTGGTGAACAAGGAACCATTGAAGCACTCAACTGCTCTGCCTGCCATTGTCACAGAAACTTCCACAGAAAAGAAGTCCAAGGTGAGACTGAGGATCAGGAGAACTACCACCATCACTCAGCCTTCAACTTCAACTTCAACAGACAGCAGCACCACCACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCAGGCTCTTGGTCTTGGCTACCACCACCACCACTCTACTCCTAATACAGCATCAGCAGCAGCAACAGGTAACAACAACAACATTCTTCCTTCTAGAGCTGTAGCGCCACCTCATGGACATGGCCACATCATCATGCCATTCAACTACAACATACCTTCTGAATCTGATGAACAAGAAGAGGCAGCAGGTAGACTACATATGCATCATCATCATCATCAACAGCAGCAGCAGCAGGAGGTAGTGATGAAGAAAAGGTTCAGGACAAAATTCACACAGGAACAGAAGGAGAAAATGTTGAACTTTGCTGAGAAAGTTGGATGGAAATTTCAAAAGCAAGAGGAATCTGTGGTGCAACAGTTCTGCCAAGAGATTGGTGTGAAAAGAAGAGTGCTAAAAGTTTGGATGCATAACAATAAACACAATCTCGCCAAAAAACAACTTCAACATGAACATACTACTGCTAGTGCTAATGCTAATCATCTCCCAACTCCATAA 1098 0.4308 MELSSSQDGEIPINHNNNNNNNNNNYGTNGHGHHMIHHHHVHEHPPHPLPLHHNHSNIIISSSSSAAVVAVVPQNPSVNGTTTPMQAAAVSTGVELDHDHSSYKKSSSVVVRYRECLKNHAAAMGGNATDGCGEFMPSGEQGTIEALNCSACHCHRNFHRKEVQGETEDQENYHHHSAFNFNFNRQQHHHSMRKFMLPLPDQALGLGYHHHHSTPNTASAAATGNNNNILPSRAVAPPHGHGHIIMPFNYNIPSESDEQEEAAGRLHMHHHHHQQQQQQEVVMKKRFRTKFTQEQKEKMLNFAEKVGWKFQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHNLAKKQLQHEHTTASANANHLPTP* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g5040 365 MobiDBLite consensus disorder prediction 1 30 - -
Mtr4g5040 365 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 284 340 IPR006455 -
Mtr4g5040 365 SUPERFAMILY Homeodomain-like 274 345 IPR009057 -
Mtr4g5040 365 MobiDBLite consensus disorder prediction 255 279 - -
Mtr4g5040 365 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 34 346 - -
Mtr4g5040 365 MobiDBLite consensus disorder prediction 258 279 - -
Mtr4g5040 365 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 34 346 - -
Mtr4g5040 365 Pfam ZF-HD protein dimerisation region 111 163 IPR006456 -
Mtr4g5040 365 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 113 162 IPR006456 -
Mtr4g5040 365 MobiDBLite consensus disorder prediction 1 44 - -
Mtr4g5040 365 Gene3D - 269 346 - -
Mtr4g5040 365 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 112 163 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g5040 Mtr-Chr4 64547140 64549267 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g5040 101 346 ZF-HD Transcription Factor Family AT2G02540 48.178 2.85e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr4g5040 ZF-HD_dimer 4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g5040 - - mtr:MTR_4g134580 600.127