Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g5036 ATGAGTGAATGTATGAAGATGAATGATCCAAGCAGGCTTCACTTGAAGAAGGAACTGACTCAAATTCGAAAGGCTGCTCGTGTGTTGAGGGATCCAGGAACAACTTCTTCCTGGAAATCAACCTCCAGATCTACTGCCAACCCATTCAGAAATCCCAATTCACTTCCTACTTCCTCCAAACACAAACACAAAGACAACAACAACAACAACAACAACACTGTCTTCTTATACAACTGGAACAACTACAACAAATCCTTCAACAAACAACAAGATCAAGAAGTAGAAGAAGAAGAAGACAACAACCACTCTTCCTCTTCCCTTCTTGCAAGTTTAGAAGACAGTTTGAGTGATGCAAACAACGCTGATGATGCTGGTTTCGATTCAAAGAGTGATGTTGGGACCCGCTCCTCCTTTTTCAGAAATTCAAATCCAAGAACAACAATCCCTCCCCCTCTTCATAACAAAAAGAAGCAAAAGCAAAAGCAAAAGCAAAACAATAATAATAATAACTTAAACCACCACAACAAAGATGACTCTGGAGATGATTATTCTAACTCCATTTCCGGTGCTTCTTCTCTTCTTCGAAAACTCAACCACAACAACAACTTCCTCACAAGAACAAGTCTCAAAGATGATTCTTCTTATTCCTATAGTACCCCTGCATTGTCCACCACCTCTTTCAACAGGTACACTCATCGCCACCGCCGTTATCCTAGCACTGTTGGATCCTATGACGGCACAACAACCTCCGTTAATGATGGTGATGATGAGGATATTGATGATGACCGTTTGGATCTGCCTGGTCGTCAAGGATGTGGTATTCCTTGTTATTGGTCAAAGAGGACTACGCCCAAACATAGCGGCAGCTGTTGTTCTCCTTCCTTCTCAGATACTTTAAGGAGGAAAGGGAGCAGCATTCTCTGTGGTACTCAATCTATATATTCAAGACACTACCGCAGATCCTCTTTTTCCGCTTTGCAGCCCCACAAGCGGAGAATGTCTTCCAGGAATGCTCGGTGCGCAAGAGGAGGAGGCATTGTTCCTTTGCTTACTAGCACTAGCAGTGGCGATGTTAGACATTGTTCATCCTCTATTGGAATTGGTAGGAGTAGGACTGATGATGATGAACTTTCTACTAACTTTGGTGAGCTTGATCTTGAGGGACTGAGCAGACTTGATGGAAGAAGGTGGTCATCTAGTTGTAGGAGTCAAGAGGGTTTGGAGATTGTTCCTCTCAATGAGGATGAAGAAGGATCTTCCTCCGAAAACAGTAGGAGTTTCAGCCACAAGTATAAGCCTTTGTTCTTCGGTGAACTCATTGGTCAGACTATTGTGGTTCACTCGCTCGTCAATGCCGTTTCCAGGGGACGAATTGCTCCTGTCTATCTTTTTCAGGGTCCCCGTGGGACTGGCAAAACATCTACTGCCAGAATATTCGCTGCAGCCTTGAACTGCGTGGCTTCTGATGAAGGTAAGCCTTGTGGATATTGCGGGGAATGTGCTGATTTCGTTTCTGGCAAGAGCTGTGATCTTGTCGAAGTCGATGGAACTAATAAGAAAGGAATCGATAAAGCTAGATATCTGCTAAAAAGATTGGCCGCCGGGTCTTCTTCGGCGGCCTCCTCGCGATATACGGTTTTTGTTATTGATGAGTGTCACTTGTTAACCTCCAAGACATGGCTGGGATTTCTCAAGTTTCTTGAAGCACCACCTCAGAGAGTTGTGTTCATATTTATAACATCCGATCTTGACAATGTGCCGCGAACAATACAGTCTCGATGCCAGAAGTACCTTTTCAATAAAATTAAAGATGGGGATATCGTGACAAGGTTAAGGAAAATATCTACTCAGGAGAATCTTGATGTTGAAACAGATGCACTGGACCTTATTGCCCTGAATGCAGATGGTTCACTTCGAGATGCAGAGACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATCACTACTTCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTAGAATTAGCAATGTCATCAGACACTGCAGAGACGGTGAAAAGGTCTAGAGAATTGATGGACTCCGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTTATTATGGACATCATAGCTGGATCATATGCGGTCGTTGATACCAAACCCGACGGTTCATTCTTTGGTGGTCGGAGTTTGAATGAAACGGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGGACTTCCAGTGAACGCTCAACATGGTTTACAGCAACTCTTTTGCAGCTTGGTTCCGTACCTTCTTCAGATGTTACTCAGTCAAGTAGCAGCAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGCTTCAAGAGACATTACTTCTTTCAAGCACAAGTTAGACCTCCAATATATGCCTCAAAAGTCAACACCCCCTGCTTCCTACCAAAAATCAGTAAACGGCAGTTCCAGGCTTCAAATTGATGGTTTCAGCTTGAATTCAAAGCCGTCAAATAGCCCAGTTATAGATGATGGATCCACAGTGGTCTCATCCGATGATCTTATTGCTGGGAATACAATGTTTAGATGCATAGACTCAGGGAAGTTATGCGACATATGGTCATGTTGTATTGAGAGGTGCCACTCTAAGACATTAAGGCAGCTGCTACACGATCATGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGGGATGGCGATATTAAACTCAGGGTTGAAAGGTTTTTAAGTAGCATTACAAACTCCTTGGAAATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCCGATGGTGAAGGTGAAAATCAGGTTAATCCGTCGGGTCTAAAGCAAGCCACGTCAGCGTTGGCAAGCAAGGACGAACAAAGGCGAGTTCATATGAATGGAGCTATTGCATATTCAAGCTTGCCTCAATCTGCCATGGGTTCCTCAGATATTCCAACTGAAGGAAATGGCGCGAAGGAAAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATAATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAAGCTGTAGAAAAAGGTTCCCCTGGATCGTTGAGTCGTTTGAGACCCGAGAAGAATCAAGTCCTGCCTCAGGATGGTGTCTATGGCATAAACCCAACGGAGTCCATGGATTCAACAAGATTTTCCTCTCATCAGCACAGGGAAGATGACACAAATAGCGATCTTAAAATTTTGGCCCTTAAAAATGGAAGGGTCCTACCGAAGGATCAGATCGGTAAAAGAGCCGACAGTTATCCCATGTCCCCAAGTATATTGCATGACAGCAGTTTAGCAATATTGTCTGGAAAAGATAACCTGGATTGTGAATCTGGTTCGGGAGCTGGAGGTTGTGGGTTTTTATGTTGGAATAACAAGTCCAAGACTAGAAGGGCAGTGAAGGTAAAAGGCACCCCAGTTGGAGGAGCGCGTAAAGTTGGGCGCTTTTCATTGTTTGGTGAGTGTGGTATGCCAAAGAAAAAGGAGAGTAAAAGATAA 3612 0.4366 MSECMKMNDPSRLHLKKELTQIRKAARVLRDPGTTSSWKSTSRSTANPFRNPNSLPTSSKHKHKDNNNNNNNTVFLYNWNNYNKSFNKQQDQEVEEEEDNNHSSSSLLASLEDSLSDANNADDAGFDSKSDVGTRSSFFRNSNPRTTIPPPLHNKKKQKQKQKQNNNNNNLNHHNKDDSGDDYSNSISGASSLLRKLNHNNNFLTRTSLKDDSSYSYSTPALSTTSFNRYTHRHRRYPSTVGSYDGTTTSVNDGDDEDIDDDRLDLPGRQGCGIPCYWSKRTTPKHSGSCCSPSFSDTLRRKGSSILCGTQSIYSRHYRRSSFSALQPHKRRMSSRNARCARGGGIVPLLTSTSSGDVRHCSSSIGIGRSRTDDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLNEDEEGSSSENSRSFSHKYKPLFFGELIGQTIVVHSLVNAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDEGKPCGYCGECADFVSGKSCDLVEVDGTNKKGIDKARYLLKRLAAGSSSAASSRYTVFVIDECHLLTSKTWLGFLKFLEAPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVETDALDLIALNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNETELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDVTQSSSSRRQSCKTTEDDPSSASRDITSFKHKLDLQYMPQKSTPPASYQKSVNGSSRLQIDGFSLNSKPSNSPVIDDGSTVVSSDDLIAGNTMFRCIDSGKLCDIWSCCIERCHSKTLRQLLHDHGKLVSISEVQGVLVAYVAFGDGDIKLRVERFLSSITNSLEIVLRRIVEVRIILLPDGEGENQVNPSGLKQATSALASKDEQRRVHMNGAIAYSSLPQSAMGSSDIPTEGNGAKERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGVYGINPTESMDSTRFSSHQHREDDTNSDLKILALKNGRVLPKDQIGKRADSYPMSPSILHDSSLAILSGKDNLDCESGSGAGGCGFLCWNNKSKTRRAVKVKGTPVGGARKVGRFSLFGECGMPKKKESKR* 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g5036 1203 MobiDBLite consensus disorder prediction 1005 1026 - -
Mtr4g5036 1203 MobiDBLite consensus disorder prediction 103 123 - -
Mtr4g5036 1203 CDD HLD_clamp_pol_III_gamma_tau 602 665 IPR045085 -
Mtr4g5036 1203 Coils Coil 154 174 - -
Mtr4g5036 1203 MobiDBLite consensus disorder prediction 780 808 - -
Mtr4g5036 1203 PANTHER PROTEIN STICHEL-LIKE 1 160 1141 - -
Mtr4g5036 1203 SMART AAA_5 458 609 IPR003593 -
Mtr4g5036 1203 Pfam DNA polymerase III, delta subunit 442 602 - -
Mtr4g5036 1203 SUPERFAMILY post-AAA+ oligomerization domain-like 673 774 IPR008921 GO:0003677|GO:0006260
Mtr4g5036 1203 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 426 776 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mtr4g5036 1203 CDD AAA 440 599 - -
Mtr4g5036 1203 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 649 IPR027417 -
Mtr4g5036 1203 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 160 1141 - -
Mtr4g5036 1203 MobiDBLite consensus disorder prediction 25 75 - -
Mtr4g5036 1203 MobiDBLite consensus disorder prediction 33 56 - -
Mtr4g5036 1203 Gene3D - 417 600 IPR027417 -
Mtr4g5036 1203 MobiDBLite consensus disorder prediction 238 258 - -
Mtr4g5036 1203 Gene3D - 604 665 - -
Mtr4g5036 1203 Coils Coil 735 765 - -
Mtr4g5036 1203 MobiDBLite consensus disorder prediction 130 149 - -
Mtr4g5036 1203 MobiDBLite consensus disorder prediction 89 184 - -
Mtr4g5036 1203 Pfam DNA polymerase III subunits gamma and tau domain III 656 774 IPR022754 GO:0003887
Mtr4g5036 1203 MobiDBLite consensus disorder prediction 794 808 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g5036 Mtr-Chr4 64512356 64518858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g5036 422 717 Core DNA Replication Machinery Family AT1G21690 24.342 2.56e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g5036 - - gmx:100791561 1521.91