Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g5035 ATGGAAGGAATGGCACAGCACCCGGTACCTCGAACTGTTGAAGAAGTTTTTAGCGATTACAAAGGCAGACGCGCCGGTTTGATCAAAGCTCTCACTACTGACGTTGAAAAGTTTTACCAGCTCTGCGATCCCGAAAAGGAGAATTTGTGCCTCTATGGGTTTCCAAATGAAACATGGGAAGTGAACTTGCCTGTCGAGGAAGTGCCTCCTGAACTTCCCGAGCCAGCATTGGGTATAAACTTTGCTCGGGATGGAATGCAGGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTGCTCGCTGTTGCTTTCTATTTTGGTGCCCGCTTTGGATTTGGTAAGAATGATAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACTGTCTTTGAGCTTGCAACAGGAACTGCTAAGCAATCAAAGGATCAACTGACTGCTCACAACAATGGTAGCAATAGCAAGTACAAATCAAGTGGAAAGTCCCGCCAGTCTGAATCTCAGACCAAGGGTGTGAAGATGTCTGCACCAGTCAAAGAAGAGGTTGACAGTGGAGAAGAAGAGGAAGATGATGATGAACAAGGTGCAACCTGTGGTGCTTGTGGTGATAATTATGGCACCGATGAATTCTGGATCTGTTGTGATATGTGCGAGAAATGGTTCCATGGTAAATGTGTTAAAATTACTCCTGCCAAGGCTGAACACATCAAGCAATACAAGTGCCCTGGCTGCAGTATCAAGAAGCCAAGAATTGGATAG 771 0.4553 MEGMAQHPVPRTVEEVFSDYKGRRAGLIKALTTDVEKFYQLCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNDRKRLFQMINDLPTVFELATGTAKQSKDQLTAHNNGSNSKYKSSGKSRQSESQTKGVKMSAPVKEEVDSGEEEEDDDEQGATCGACGDNYGTDEFWICCDMCEKWFHGKCVKITPAKAEHIKQYKCPGCSIKKPRIG* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g5035 256 Pfam PHD-finger 202 249 IPR019787 -
Mtr4g5035 256 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 6 5 254 - -
Mtr4g5035 256 PANTHER CPG BINDING PROTEIN 5 254 IPR045104 GO:0006355|GO:0042393
Mtr4g5035 256 CDD PHD_AL_plant 202 251 IPR044104 -
Mtr4g5035 256 SUPERFAMILY FYVE/PHD zinc finger 190 253 IPR011011 -
Mtr4g5035 256 ProSiteProfiles Zinc finger PHD-type profile. 199 251 IPR019787 -
Mtr4g5035 256 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Mtr4g5035 256 SMART PHD_3 201 249 IPR001965 -
Mtr4g5035 256 MobiDBLite consensus disorder prediction 145 199 - -
Mtr4g5035 256 Pfam Alfin 12 138 IPR021998 GO:0006355|GO:0042393
Mtr4g5035 256 MobiDBLite consensus disorder prediction 145 176 - -
Mtr4g5035 256 ProSitePatterns Zinc finger PHD-type signature. 202 248 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g5035 Mtr-Chr4 64500008 64504286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g5035 1 252 Alfin-like Transcription Factor Family AT1G14510 78.968 7.75e-129 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mtr4g5035 Alfin 2e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g5035 - - gmx:100807826 438.343