Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g5018 ATGAAAAGATCCACCGATGAATTGGCCCCCGTCCCCGCCACCGCTATCCCCAAACCAGTTTTCCTCACTAAAGCCCAACGTGAACAACAAGCACTCGAACGCCGCCACAATCAAGTCGCCGGTCACAAACGCGACCAAGAAGAACTTCTCCTCCTTTCCACTAATAACAACATCAACCGCTCCTCTGATTCCGACCGCCGTGATCGTGACCGTGACCGTGGTCACGATCGAGACAGTTACAGAGAACGTGATAGAGACAGAGACAGAGAAAGAGAAAGAGACAGAGATAACAGAGATCGTGAACGAAGACACCGCGATAGAGAACGTGAAGAAGAGAATAAAGTTCGTGAGCGAGCTCGATTGGAGAAGCTAGCGGAACGAGAACGTGAAAAGGAGCTTGATTCGATTAAGGAACAATACCTAGGTTCAAAAAAACCTAAAAAAAGGGTTATTAAACCTAGTGAGAAATTTCGATTTTCTTTTGATTGGGAAAATACTGAAGATACTTCGCGTGATATGAATGTTCTTTATCAAAACCCTCATGAAGCTCAGCTTCTTTTTGGCCGAGGGTTTAGAGCTGGAATGGATCGCCGTGAGCAGAAGAAGCTTGCGGCAAAGCACGAGAAAGAGATGAGGGATCAGATTAGGAAGAAGGATGGTGTCGAGGAGAAGCCCGAGGAAGCTGATGCTCAGCGGCGTAAGGAGGAGGCTGCTGATGCTTATGATACGTTTGATATGAGGGTTGATCGTCATTGGAGTGAGAAGAAGCTTGAGGAAATGACCGAGAGGGATTGGCGTATATTTAGGGAAGATTATAACATTTCTTATAAGGGTTCCAAGATTCCAAGACCTATGAGGAGTTGGGTTGAGAGTAAGTTGAGTCAAGAGCTTTTGAAGGCTGTGGAGAAGGCTGGTTATAAAACCCCTTCTCCCATTCAGATGGCTGCTATTCCGCTTGGACTTCAGCAGCGCGATGTTATCGGCGTTGCTGAGACAGGTTCTGGGAAGACTGCTGCGTTTGTTTTGCCTATGTTGAGTTATATCACTAGGCTTCCTCCTATTAGTGAGGAGAATGAAGCGGAGGGTCCTTATGCTGTTGTTATGGCGCCCACTCGCGAGCTTGCTCAGCAGATTGAGGATGAGACGGTTAAATTTGCTCAGTATATGGGGATTAAAGTTGTTTCCATTGTTGGTGGTCAGTCTATCGAGGAGCAAGGGTTTAAGATAAGGCAGGGTTGTGAAATTGTGATTGCGACTCCTGGTCGTTTGATTGATTGCTTGGAGCGTCGCTATGCTGTTCTTAATCAGTGTAATTATGTGGTTCTTGACGAGGCTGATCGTATGATTGATATGGGGTTTGAGCCACAGGTCATGGGTGTGCTAGATGCAATGCCTTCGAGTAATCTCAAACCGGAGAATGAAGATGAGGAGCTTGATGAGAAGAGGATTTATAGGACTACTTATATGTTCAGTGCTACCATGCCACCTGCTGTGGAGAGGCTTGCTAGGAAGTATTTGAGGAACCCTGTTGTCGTGACTATAGGAACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAAAATTATAAGCTTCAGAGATTGTTGGATGAGCTTAATGACAAGACTGCGATTGTGTTTGTAAACACCAAGAAGAGCGCTGATTTTCTTGCTAAGAATTTGGACAAGGAAGGCTATCGTGTGACCACTTTGCATGGAGGGAAATCACAAGATCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTGCTTGTTGCAACCGATGTTGCTGGACGTGGTATTGACATTCCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACCCATCGTATTGGGCGTACTGGTCGTGCAGGAAAGACAGGTGTGGCTACAACATTCCTGACTCTTCAGGACACTGATGTCTTTTATGAACTTAAGCAGATGCTCATTCAGAGTAACAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCCAAATTCAAGCCAGGATCTATTCCTGACAGACCACCTAGGCGAAATGACACTGTTTTTGCCCATTAA 2121 0.4545 MKRSTDELAPVPATAIPKPVFLTKAQREQQALERRHNQVAGHKRDQEELLLLSTNNNINRSSDSDRRDRDRDRGHDRDSYRERDRDRDRERERDRDNRDRERRHRDREREEENKVRERARLEKLAEREREKELDSIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNVLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKHEKEMRDQIRKKDGVEEKPEEADAQRRKEEAADAYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKNYKLQRLLDELNDKTAIVFVNTKKSADFLAKNLDKEGYRVTTLHGGKSQDQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYELKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH* 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g5018 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 665 IPR027417 -
Mtr4g5018 706 MobiDBLite consensus disorder prediction 28 49 - -
Mtr4g5018 706 Pfam DEAD/DEAH box helicase 311 501 IPR011545 GO:0003676|GO:0005524
Mtr4g5018 706 Pfam Helicase conserved C-terminal domain 539 644 IPR001650 -
Mtr4g5018 706 Coils Coil 197 224 - -
Mtr4g5018 706 CDD SF2_C_DEAD 524 653 - -
Mtr4g5018 706 PANTHER - 99 699 - -
Mtr4g5018 706 Gene3D - 247 516 IPR027417 -
Mtr4g5018 706 SMART ultradead3 305 527 IPR014001 -
Mtr4g5018 706 SMART helicmild6 563 644 IPR001650 -
Mtr4g5018 706 CDD DEADc_DDX23 297 513 - -
Mtr4g5018 706 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 441 449 IPR000629 -
Mtr4g5018 706 MobiDBLite consensus disorder prediction 673 706 - -
Mtr4g5018 706 Coils Coil 530 550 - -
Mtr4g5018 706 MobiDBLite consensus disorder prediction 61 145 - -
Mtr4g5018 706 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 286 314 IPR014014 GO:0003724
Mtr4g5018 706 MobiDBLite consensus disorder prediction 1 149 - -
Mtr4g5018 706 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 99 699 - -
Mtr4g5018 706 Coils Coil 107 131 - -
Mtr4g5018 706 Gene3D - 517 704 IPR027417 -
Mtr4g5018 706 MobiDBLite consensus disorder prediction 681 706 - -
Mtr4g5018 706 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 539 683 IPR001650 -
Mtr4g5018 706 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 317 512 IPR014001 -
Mtr4g5018 706 MobiDBLite consensus disorder prediction 204 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g5018 Mtr-Chr4 64336946 64340799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g5018 293 693 Eukaryotic Initiation Factors Gene Family AT3G13920 32.921 2.75e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g5018 K12858 - gmx:100799264 1163.67