LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g5009	ATGGAAGTTGTTGATGGGAATGGAGAACATTCTATTGATGGGAATGAAGAGCAAGCTCTCAAGGAGATTGATGACAATGATTCATGTACCGTTGATTTAGAGGCTAACGGTGGTCAAGAACCTAACATTGGAATGAAATTTGATTCACAAGAAAATGCTTATTCGTTCTACACTCATTATGCTAAATCAGTTGGGTTTGGGATATCAATTAAAAATAGTCGTCGTTCAAAGATTTCTAGAGAGTTTATTGATGTAAGTTATGCTTGCACAAGATACGGCAAGAAGCGAGAATCCAGTTCACAAAATCCACGTCCTTGTTTGAAGGTGGGATGTGAGGCTAGTTTACGTGTTAAAAGAATTTGTGATGGAAAATGGATTGTTCATAGCTTCATTAAAGACCACAATCACGAACTTTTTCCAGCATATGCACATTATTTTCCTTGCCATAGAGGAATCAATAAAGCTCAAAAGCATTCTATTGAAACTTTGCACCATGTTGGAGTGAGAACAAGCAAAAATTTTGCCACAATGGCCAAAGAATATGGAGGATATGAAAACATTGGTTGCTTGGAGAAAGATGTAAGAAACCATTTAGATAAAGGTCGGCGTTTGGCTTTAGAATCTGGAGATGCAAATGCAATGTTGGATTGTTTTATGCTCATGCAAGAAGAAAGTCCAGGATTCTTTTATGCAATTGATATGGATGATGAGGGTCGCATGAAAAATGTATTTTGGGTGGATGCAAAAGGTAGAGAAGACTATCAAGAGTTTGGAGATGTGATTTCATTTGATACTACATATATCACAAATAAGTACAAAATGCCATTTGCTCCTTTTATTGGTGTAAACAATCACTTTCAATCAAGGTTACTTGGCTGTGCATTACTCTCAGATGAGACCAAGAACACTTTCATATGGTTGATGAAAATATGGCTTAGAGCAATGGATGGAAAACCTCCAAATGCAATCATAACTGATCAAGATAGAGCAATGAAAGAGGCTATTAAAGAGGTATTTCCAAATTCTCGACATCGATTTTGTCTTTGGCATATACTTAGAAAGGTGCCTGAGAAGCTTAGTCATGTTTTAAGAGATGACGAAGACTTCATGAGATATCTCAACATATGCATATATAAGTCTTAG	1143	0.364	MEVVDGNGEHSIDGNEEQALKEIDDNDSCTVDLEANGGQEPNIGMKFDSQENAYSFYTHYAKSVGFGISIKNSRRSKISREFIDVSYACTRYGKKRESSSQNPRPCLKVGCEASLRVKRICDGKWIVHSFIKDHNHELFPAYAHYFPCHRGINKAQKHSIETLHHVGVRTSKNFATMAKEYGGYENIGCLEKDVRNHLDKGRRLALESGDANAMLDCFMLMQEESPGFFYAIDMDDEGRMKNVFWVDAKGREDYQEFGDVISFDTTYITNKYKMPFAPFIGVNNHFQSRLLGCALLSDETKNTFIWLMKIWLRAMDGKPPNAIITDQDRAMKEAIKEVFPNSRHRFCLWHILRKVPEKLSHVLRDDEDFMRYLNICIYKS*	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g5009	380	Pfam	MULE transposase domain	260	353	IPR018289	-
	Mtr4g5009	380	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	17	380	IPR031052	GO:0006355
	Mtr4g5009	380	PANTHER	PROTEIN FAR-RED ELONGATED HYPOCOTYL 3	17	380	-	-
	Mtr4g5009	380	Pfam	FAR1 DNA-binding domain	55	140	IPR004330	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g5009	Mtr-Chr4	64277280	64278422	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Mtr4g5009		MULE	2.1e-30	CL0219

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g5009	-		-	dzi:111309578	504.982