Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g5008 ATGGAAACTGGAGGAGGGTTTCATGGCTACCGCAAACTCCCCACCAACACCAATTCTTCTGCAGTAGCAGGGACGTTGAAGCTATCATCAGTTTCTGAGATGAACACGAGGCAGCAAGTAGGAGAACAGAACAACAATGGTACAGAACAAGACAATGAATGCATTGTGAGGGAACAAGACCGTTTTATGCCAATTGCAAATGTGATAAGGATCATGCGCAAGATTCTACCACCACATGCAAAAATATCTGATGATGCAAAAGAAACAATCCAAGAGTGTGTGTCTGAGTACATCAGCTTCATAACTGGAGAAGCCAATGAACGTTGTCAGAGAGAGCAAAGGAAGACAATAACTGCAGAAGATGTGCTTTGGGCTATGAGTAAGCTTGGTTTTGATGATTACATTGAACCTCTAACAATGTACCTTCATCGTTATCGTGAGCTTGAAGGTGATCGTACCTCAATGAGAGTTGAACCTTTGGGAAAGAGGGGTATGGAATATGGAAATTTAGGGGGGTTTGTCCCACAGTTTCATATCGGTCATCCAAATGGAGGGTATTATGGTAATGCTGCACCAACTTATATGATGAGGGATGGTAATAATAATAATAATAATAATAATAATGCACCAAATGCTGCTAATGCTGCTGGAGGCTCATCTCATTCTCAGGCACTTGCAAATGCTGAAGCCAATGGTCATCATCATCACCATCAATATAAATGA 723 0.4149 METGGGFHGYRKLPTNTNSSAVAGTLKLSSVSEMNTRQQVGEQNNNGTEQDNECIVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRVEPLGKRGMEYGNLGGFVPQFHIGHPNGGYYGNAAPTYMMRDGNNNNNNNNNAPNAANAAGGSSHSQALANAEANGHHHHHQYK* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g5008 240 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 126 IPR003958 -
Mtr4g5008 240 ProSitePatterns NF-YB/HAP3 subunit signature. 93 109 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr4g5008 240 MobiDBLite consensus disorder prediction 198 223 - -
Mtr4g5008 240 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 162 - -
Mtr4g5008 240 SUPERFAMILY Histone-fold 59 156 IPR009072 GO:0046982
Mtr4g5008 240 Gene3D Histone, subunit A 50 166 IPR009072 GO:0046982
Mtr4g5008 240 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Mtr4g5008 240 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Mtr4g5008 240 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Mtr4g5008 240 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 162 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g5008 Mtr-Chr4 64266544 64269079 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g5008 5 196 CCAAT-HAP3 Transcription Factor Family AT5G47670 60.849 3.93e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr4g5008 CBFD_NFYB_HMF 7.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g5008 K08065 - gmx:100800011 280.796