Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g5006 ATGGCAGAATCAGATGATGAATCAGGTGGTCAAGCTTCAGGGAGCAGAGAATTACTGCAAGAAAGGCTTCTTCCCATAGCAAACGTGGGTAGGATCATGAAGAAAGCGTTACCGACGAGAGCAAAGATATCGAAAGAAGCTAAAGAAACGATGCAAGAGTGTGTATCAGAGTTCATAAGCTTCATAACAGGTGAAGCATCTGAAAAGTGTCAGAAAGAGAAGAGGAAGACAATAAACGGTGATGATCTTGTGTGGGCCATGACTACACTTGGCTTTGAAGAATATGCAGAGCCTCTTAAGGGTTATCTTCTCAAGTATAGGGAAATTGAAGGAGACAAGAATTTCTCTATGAATATGATTGGTAGTAATAAGGAGCAGGAAGGTAGTATTCATCGATTCTTCCAAGGTTAA 411 0.4088 MAESDDESGGQASGSRELLQERLLPIANVGRIMKKALPTRAKISKEAKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKGYLLKYREIEGDKNFSMNMIGSNKEQEGSIHRFFQG* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g5006 136 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 129 - -
Mtr4g5006 136 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mtr4g5006 136 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mtr4g5006 136 SUPERFAMILY Histone-fold 20 115 IPR009072 GO:0046982
Mtr4g5006 136 Gene3D Histone, subunit A 12 132 IPR009072 GO:0046982
Mtr4g5006 136 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Mtr4g5006 136 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Mtr4g5006 136 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Mtr4g5006 136 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g5006 Mtr-Chr4 64237138 64237792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g5006 1 113 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.214 4.88e-60 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mtr4g5006 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g5006 K08065 - han:110889680 187.193