Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g5001 ATGATTTTAGTTATTGAAGGTGAAAGGAAGAAATTAATATGTGACAGAAGCACTTCAACAACTAGTTTTAGTTTTGATGAGCTTGTAATTGCGACCGGAAATTTTAAGGAATTGCTGGGGGTAGGTGGTTTTGGAAGTGTTTACAAGGGTCGTCTCCCAAACGGCGAGCTTGTTGCAGTAAAACAGTTAAATCCTGATGGTTGTCAAGGCTGTCACGAATTTATGACAGAGCTTGATATTCTAAGTGTGCTGCGTCATGCTAATCTTGTTAAGTTAATTGGTTATTGCACCAATGGAGATCAAATGCTTTTGGTTTATGAATACATGCCTAAGGGATCTCTTGAAGCTCATCTTTTTGTTAAACAATGTTTAGGATATCATAACTTATTTCTCATTTCAGATGTTACCCAAGACAAAGCTCCATTAAGTTGGAGCTCTCGGATAAAGATTTCTCTTGGAGCAGCTCAAGGTCTTGAGTATCTCCACTGTCAAGTTGATCCACCGGTTATCCATCGAGACTTGAAATCTTCAAACATTTTACTGGAACATGACTTCAGTGCAAAACTGTCAGATTTCGGGCTTGCTAAACTTGGACCGGTTGGAGACGACACACATGTTTCAACCCGAGTGATGGGTACCGAAGGCTATTGCGCACTAGAATATGCTATGACTGGCAAATTAACTAAACAATCCGATATCTACAGTTTTGGTGTGGTTTTGCTGGAACTGATAACCGGACGTAGAGCCCTGGATACTAGTAGGGAAGCAGGGGAGCAATACTTAGTTGCATGGTGTCTCCCATATCTGAATGAACCGAGAGAATTTATGCATAAGGTTGACCCTCTTTTGCAAGGACACTTCCCCAACCGAGGTCTGCGTCGTCTGCTTTTAATAATTGATATGTGTCTCCGGGAGAATCCAAGAGAACGTCCAACCATTGGTGAAATTGTTGATGCACTAAAATACTTATCTTCCAAGAGTACCTCTAAAGTCTATAAACATGGGTTGCGCAGCTAA 1017 0.41 MILVIEGERKKLICDRSTSTTSFSFDELVIATGNFKELLGVGGFGSVYKGRLPNGELVAVKQLNPDGCQGCHEFMTELDILSVLRHANLVKLIGYCTNGDQMLLVYEYMPKGSLEAHLFVKQCLGYHNLFLISDVTQDKAPLSWSSRIKISLGAAQGLEYLHCQVDPPVIHRDLKSSNILLEHDFSAKLSDFGLAKLGPVGDDTHVSTRVMGTEGYCALEYAMTGKLTKQSDIYSFGVVLLELITGRRALDTSREAGEQYLVAWCLPYLNEPREFMHKVDPLLQGHFPNRGLRRLLLIIDMCLRENPRERPTIGEIVDALKYLSSKSTSKVYKHGLRS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g5001 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Mtr4g5001 338 ProSitePatterns Protein kinases ATP-binding region signature. 39 61 IPR017441 GO:0005524
Mtr4g5001 338 PIRSF ILK 30 335 - -
Mtr4g5001 338 ProSiteProfiles Protein kinase domain profile. 33 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g5001 338 SUPERFAMILY Protein kinase-like (PK-like) 16 320 IPR011009 -
Mtr4g5001 338 SMART serkin_6 33 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g5001 338 Gene3D Phosphorylase Kinase; domain 1 7 108 - -
Mtr4g5001 338 CDD STKc_IRAK 39 321 - -
Mtr4g5001 338 PANTHER OS07G0668900 PROTEIN 18 327 - -
Mtr4g5001 338 Gene3D Transferase(Phosphotransferase) domain 1 109 335 - -
Mtr4g5001 338 PANTHER OS07G0668900 PROTEIN 18 327 - -
Mtr4g5001 338 Pfam Protein tyrosine and serine/threonine kinase 35 320 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g5001 Mtr-Chr4 64189042 64191175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g5001 19 325 Glycoside Hydrolase AT3G07070 55.484 1.09e-116 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Mtr4g5001 PK_Tyr_Ser-Thr 9.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g5001 - - gmx:100796595 389.423