Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4978 ATGAATAGCTCCACAAGCGATGCTTTGTTTGATGATGCATGTGCGTATGACAATGCAGTAAAATCTACATGTCAAGAAAAGTATTCTGAATTTGCAGAAGTCATGAGTGATTACAGGGATGGACGAATTGACCCAGGAGGTGTCAAAGCAAGAGTGCACGAGTTATTTAAAGGCCATAAACATTTAATTTTGGGAATCAACAACATCATGCCAAAGAATTATGAAATCATACTTCCTCCATCGGATGAAAAAGTGAATCGACAAGATGCAACAACTTTTCTCAAACAAGTAAAAGTTGTGTTTCAAGATAAGATGGAAAAATATTATGAGTTTCTACAAGTCATACACGATTACATGAATCTAACAATTGATATATTAGATGTCATCGAAATAGGGATGAAGCTATTTAAAGGGCATGTCGATTTACTTTCGGGATTCAACTACTTCTTGCCAGAAAGATACCAAATCACATATCCATTGTTGCATGATCATAAACAAGGTCATCAATTAGTGATAAAAGATGCATTTCTCAATGAAGTCAAAGCCGTGTTTCGTGATAAGTTGGAAAAATATTTTGAGTTTTTACAATTGATCACGGATCACAAGGCTCAAGGAATTGATACGAGAGGTGTTGTGGCAATAGTGAAAGAGTTATTTAAAGAGCATAGAAATTTAATTTTGGGATTCAATGCCTTCCTGCCAGAGGAACATCGAATCACACTTCCATTTGAGCTTCATTGCCATGAAACTGGGAAAAGAAGAATTGTAGCAGCTAACTATGAGCTTTCTTGGGATGTTCTTGATATCATTTCCAAATCTCTAGACTTTGATGATCTCTTTCAATTTGCTTGTGTGTGTAAGAATTGGAGGGCATTTCATAAAATGTATTGGAGAAATTTCTTGGCATTACAAGAACCATTACTTGTTCAAAAGTCTTCCTTTTTCAAGAAATCTTTTTCCTTTATCAGCATACCTAACCAAAAAGTTTATCGCTCAAAGATGATCAATTATTTCTGGCACTTTGCATATTCTGGATCTTCTAGTGGATATTTGATCATGACAGGGAACAATAACTCATTTCTGCTAATGAATCCATTTACGAGAAGAAAGAAGGTAATCAATACCTCAACCTTTAAAGTAAATTTTTCTTATTTCGCTTACCGTGTCTTGCTTGCTTTTGACAAAGGCTCCAAGGATTTTGTCTTAGTGGCTTTATGTAAAAGTTCTAACAGTTTGCATGTCTATCAATCTCGAAATTTTGGTTGGGTTACTTATTCAACAATGGGATATCCATGGATGATTGTTGACTTTGTTGTTTTGCACAACACTATATATGTTGTCAACGACAAGGCCAACATAGGGATACTCAACTTAAATTCTGCAAATATTAAGTTTTTAGAAATGAAGTGTATTCCTAGCGTAACTTCCTTGTCACACCTAAGGTTGGTTAGTTGTGATGAACAACTTTTTGTGGTTCATACCAAGCCCGGTGTAGTATTTAATGTGTATAAGATTGACTTTTCAACCATGAAGTATGTCAAGTTGAAAACTTTGGGAGACATTGCATTATTATATGCTCCTGGTGGAAACTACTATGCCTTGAGCAACCCGAACAGATGGGGTTATGAAAGCAACTCTGTGTATGTCATTGATCGTTCCTCTACAAAATGCAGAGTGTATGTAGGGGATGATAACAAGCTGCCAAAGTACATTAGGCCACATGAAGATCTTCATATTATGAGACCCTACTGGTTGGACTGGTCTTTTAGACATCTTCACTACGAGATAGATTATTCTCTAGCTGACTAA 1809 0.3582 MNSSTSDALFDDACAYDNAVKSTCQEKYSEFAEVMSDYRDGRIDPGGVKARVHELFKGHKHLILGINNIMPKNYEIILPPSDEKVNRQDATTFLKQVKVVFQDKMEKYYEFLQVIHDYMNLTIDILDVIEIGMKLFKGHVDLLSGFNYFLPERYQITYPLLHDHKQGHQLVIKDAFLNEVKAVFRDKLEKYFEFLQLITDHKAQGIDTRGVVAIVKELFKEHRNLILGFNAFLPEEHRITLPFELHCHETGKRRIVAANYELSWDVLDIISKSLDFDDLFQFACVCKNWRAFHKMYWRNFLALQEPLLVQKSSFFKKSFSFISIPNQKVYRSKMINYFWHFAYSGSSSGYLIMTGNNNSFLLMNPFTRRKKVINTSTFKVNFSYFAYRVLLAFDKGSKDFVLVALCKSSNSLHVYQSRNFGWVTYSTMGYPWMIVDFVVLHNTIYVVNDKANIGILNLNSANIKFLEMKCIPSVTSLSHLRLVSCDEQLFVVHTKPGVVFNVYKIDFSTMKYVKLKTLGDIALLYAPGGNYYALSNPNRWGYESNSVYVIDRSSTKCRVYVGDDNKLPKYIRPHEDLHIMRPYWLDWSFRHLHYEIDYSLAD* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4978 602 ProSiteProfiles PAH domain profile. 166 236 IPR003822 GO:0006355
Mtr4g4978 602 ProSiteProfiles PAH domain profile. 81 153 IPR003822 GO:0006355
Mtr4g4978 602 Gene3D Paired amphipathic helix 12 71 IPR036600 GO:0006355
Mtr4g4978 602 Gene3D Paired amphipathic helix 175 234 IPR036600 GO:0006355
Mtr4g4978 602 Gene3D Paired amphipathic helix 89 151 IPR036600 GO:0006355
Mtr4g4978 602 PANTHER OS06G0113600 PROTEIN 261 597 - -
Mtr4g4978 602 SUPERFAMILY F-box domain 261 304 IPR036047 GO:0005515
Mtr4g4978 602 SUPERFAMILY PAH2 domain 80 151 IPR036600 GO:0006355
Mtr4g4978 602 Pfam Paired amphipathic helix repeat 26 65 IPR003822 GO:0006355
Mtr4g4978 602 Pfam Paired amphipathic helix repeat 106 150 IPR003822 GO:0006355
Mtr4g4978 602 Pfam Paired amphipathic helix repeat 189 233 IPR003822 GO:0006355
Mtr4g4978 602 SUPERFAMILY PAH2 domain 175 235 IPR036600 GO:0006355
Mtr4g4978 602 Pfam F-box domain 261 291 IPR001810 GO:0005515
Mtr4g4978 602 SUPERFAMILY PAH2 domain 10 74 IPR036600 GO:0006355
Mtr4g4978 602 PANTHER OS06G0113600 PROTEIN 261 597 - -
Mtr4g4978 602 ProSiteProfiles PAH domain profile. 6 73 IPR003822 GO:0006355
Mtr4g4978 602 SUPERFAMILY Galactose oxidase, central domain 338 556 IPR011043 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4978 Mtr-Chr4 63935130 63943719 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4978 176 241 WRKY Transcription Factor Family AT4G12020 50.000 4.70e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr4g4978 PAH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4978 - K11644 cam:101488742 766.918