Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4972 ATGACTCCGATCGAAAGCCCTAACCTTCTTCAACAACAACAACAACAGAATCGTTCTTCGTCCAAACGAAAATTAGACGAAGACGACGAAAACAACGCGTTAGATGATGACTTAGTCTATGTAAGAATGAGAAAAGACGAAACCACAAAAACAACTCTTCATTCTTCATGGACCGGCGGTGGTGGTGGTTCTAGCGGCGGCGATGGTGGTGGTGCTTTCTCTAAGAAAAAATCACCTATTCATTTTTTCATTCGAATGATGTCAAAAGGATACAACGTTGTTATACATGCTTATCCAGAAGAAACAGTGAAATCAATTCACGAACGAATTGAAGAGATGAAAGGAATTCCTCTTTTTGAACAGAGGTTGATTTTCAATGGTAAACAGCTTCAGTGGGAACAAACACTCGTGGAGTGTGGAATTCAAAACGACGCCAATCTTCACCTTGTTGGTCGAATGCGTAGTACAGAACATCCTCAAGCTTGGCAAGTTGTTAATGATATGGTTTCTATTGTTTATGATCTTTGTCATGGTGTTAATCTTCCTGACGCTGTTAAATCTATTAAGAGTTTGCTTACTACTTATATTAATTTGGCTTTGGCACCTAAACCTAAACTTGATGCTGATTCTGCTACTAGTTATTTTCAGATTTTCATGAATTCTTCTGCCATTTCGGTTCTTGTTACGTTGTATGTTTCGCCTTATACAGGGAATAAGGCGTGTTCTGATACTTGTATTAAGCATTTTTTGAATGGTTGTAAAACCTCATTGTCCAAGACGTTTCATACGCAGGCTGCACGTGTGGCGTTGGAGTTTTGTAAATTGCTTAGTAGAGTTGGGACTAATGATCCTTTGTATCTTTTTTGTCGTAGTAGTTTGGGGGGTTTTTTGGAAGCTGCTGAAATTTCACTTGCGGCGTCTGAGGATGAGAATCACAAAGGGTTGGTGTTGGTTCAGGATCTGTTTCCGTTTGTTCGTGAACTTGCTGATAGTTTGTTGAGGAATTTGGATTTGAGCTTGGAATCCCCTTCCCTTGCCAATCCTTTGTTGAACAGTGTTGAGGATTTTCAAGCCTTTTTAGTCCCTGTGAGGACTGGAATCGAGCAGCAACAGGCCCTCCGTGGTTGTGTTGCTTACCACCAGAAGCAGGACAAGAACAAGAATGGATTGGTTGCTGAAGAGATTGAATACCTTCGTCTGTTGTACGATCAGTTGTTGTCCAAAATTGATACTTGCCTTCAAAAAATGGACAAGAGATTCACTGACAAGGAAATGGTGTTTGAGGAAAATTATTTTTATCCTGCGTGCTCTCTCTATCTTTCAATTTTGAAGGAGTTGCATAAGATTTCTAAGCTTTATGATGGTGCTACAGAAGAGCTCTGTCATGTTTTGATGCGTCGAAAGAGTGTGATGTGTCTGATCATTGTTAAATATGCAAAAAGGGCAGACGAGCACCAGTGGATTCTTGAGTACAAGAATGTCACCAATTTCGAGGCTAGGAGGCATTTGGCCATGATGATATTCCCGGAGGTGAAAGAAGACTATGAGGAGTTGCATGAGATGCTCATTGACAGGTCTCAGTTGTTAACTGAATCTTTTGAATACATTGCACGTGCTGATCCCGAATCACTGCGTGCTGGACTGTTTATGGAATTCAAAAATGAAGAAGCCACTGGCCCTGGTGTGCTGAGGGAGTGGTTTCTTTTGGTTTGTCAAGCACTTTTCAATCAGGAACATGCTCTTTTTGTTGCCTGCCCAAAAGATCGAACAAGATTTCTCCCCAATTCTGCTTCCAAGGTACAACATAATCTGCATCTTGAGTACTTCAGCTTCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATAAGGTGCAAGTTGGTATTGTTTTTGATCGCGTGTTTTTCTTGCAATTGGCTGGAAAGCCTATTACTTTAGAAGACATAAGGGATGCAGATCCTGACCTATATAGAAGCTGCAAGCAAATATTGGACATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACGTTTATTAGAGAAGTGGAGGAATTAGGACAGAGGAAAGCGATCCAGCTGTGTCCTGGTGGAAAAAACATTGTAGTTAATAGTAAGAACAGGGTGAAGTATGTTGATCTTCTTATAAAGGATCGTTTTGTAACATCCATAGCTGAGCAGGTTTCACACTTTGCCAAAGGTTTTGCTGAGATTCTTTCAAGTTCAAAGCTCCAGCAGTTCTTCTTTCAAAGTTTAGAGTCTGAAGATCTTGATTGGATGCTGCGTGGGAGTGAAGATGCCATTTCCGTCGAAGATTGGAAAGCACACACTGAGTATAATGGCTATACAGACACAGATATTCAGATATCTTGGTTTTGGGAGATAGTGGGGAGAATGACAGCTGAAGAAAAGAAGGTTCTTCTTTTCTTTTGGACGTCTGTGAAATATTTACCAGTTGAAGGCTTTCGTGGTTTGGGTTCCCGTCTCCACATTTACAAGTCCCATGAATCCGGTGATCGTCTTCCTTCATCTCATACATGCTTTTATCGGCTGTGTTTCCCAGCTTATTCATCTATGCCTGTCATGCAAGCTCGTCTTAAAGTCATTACCCAAGAACATATTGGCTCTAGTTTTGGTACTTGGTGA 2646 0.4089 MTPIESPNLLQQQQQQNRSSSKRKLDEDDENNALDDDLVYVRMRKDETTKTTLHSSWTGGGGGSSGGDGGGAFSKKKSPIHFFIRMMSKGYNVVIHAYPEETVKSIHERIEEMKGIPLFEQRLIFNGKQLQWEQTLVECGIQNDANLHLVGRMRSTEHPQAWQVVNDMVSIVYDLCHGVNLPDAVKSIKSLLTTYINLALAPKPKLDADSATSYFQIFMNSSAISVLVTLYVSPYTGNKACSDTCIKHFLNGCKTSLSKTFHTQAARVALEFCKLLSRVGTNDPLYLFCRSSLGGFLEAAEISLAASEDENHKGLVLVQDLFPFVRELADSLLRNLDLSLESPSLANPLLNSVEDFQAFLVPVRTGIEQQQALRGCVAYHQKQDKNKNGLVAEEIEYLRLLYDQLLSKIDTCLQKMDKRFTDKEMVFEENYFYPACSLYLSILKELHKISKLYDGATEELCHVLMRRKSVMCLIIVKYAKRADEHQWILEYKNVTNFEARRHLAMMIFPEVKEDYEELHEMLIDRSQLLTESFEYIARADPESLRAGLFMEFKNEEATGPGVLREWFLLVCQALFNQEHALFVACPKDRTRFLPNSASKVQHNLHLEYFSFCGRVIALALMHKVQVGIVFDRVFFLQLAGKPITLEDIRDADPDLYRSCKQILDMDSDFIDSDALGLTFIREVEELGQRKAIQLCPGGKNIVVNSKNRVKYVDLLIKDRFVTSIAEQVSHFAKGFAEILSSSKLQQFFFQSLESEDLDWMLRGSEDAISVEDWKAHTEYNGYTDTDIQISWFWEIVGRMTAEEKKVLLFFWTSVKYLPVEGFRGLGSRLHIYKSHESGDRLPSSHTCFYRLCFPAYSSMPVMQARLKVITQEHIGSSFGTW* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4972 881 MobiDBLite consensus disorder prediction 1 72 - -
Mtr4g4972 881 MobiDBLite consensus disorder prediction 20 51 - -
Mtr4g4972 881 Gene3D Hect, E3 ligase catalytic domain 764 880 - -
Mtr4g4972 881 SUPERFAMILY Hect, E3 ligase catalytic domain 515 867 IPR035983 GO:0004842
Mtr4g4972 881 Pfam HECT-domain (ubiquitin-transferase) 569 873 IPR000569 GO:0004842
Mtr4g4972 881 Gene3D Hect, E3 ligase catalytic domains 520 753 - -
Mtr4g4972 881 CDD HECTc 519 879 IPR000569 GO:0004842
Mtr4g4972 881 SMART ubq_7 80 152 IPR000626 GO:0005515
Mtr4g4972 881 SMART hect_3 538 879 IPR000569 GO:0004842
Mtr4g4972 881 ProSiteProfiles HECT domain profile. 540 881 IPR000569 GO:0004842
Mtr4g4972 881 Gene3D Hect, E3 ligase catalytic domain 641 723 - -
Mtr4g4972 881 MobiDBLite consensus disorder prediction 1 19 - -
Mtr4g4972 881 Pfam Ubiquitin family 83 154 IPR000626 GO:0005515
Mtr4g4972 881 PRINTS Ubiquitin signature 91 111 IPR019956 -
Mtr4g4972 881 PRINTS Ubiquitin signature 112 132 IPR019956 -
Mtr4g4972 881 PRINTS Ubiquitin signature 133 154 IPR019956 -
Mtr4g4972 881 Gene3D - 73 168 - -
Mtr4g4972 881 SUPERFAMILY Ubiquitin-like 81 168 IPR029071 -
Mtr4g4972 881 ProSiteProfiles Ubiquitin domain profile. 80 156 IPR000626 GO:0005515
Mtr4g4972 881 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 75 879 - -
Mtr4g4972 881 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 75 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4972 Mtr-Chr4 63865851 63872104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4972 80 155 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 34.211 6.15e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4972 - - gmx:100789233 1213.36