Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4966 ATGGATGAGAAAATGTTAGAGAGTCTTCCTGCAATTGTTGCTATGGTCTGGTCGGATGATAACAGCAAACAACTAGAAGGAGCTACTAAATTTAGGAAGCTTCTTTTGACACACAACCCTCCCATCGAGAAAATCATTCAATCCTTTGTTGTAACTCGATTTCTCGAATTTATACCGAGGGATGATTTTCCTAAACTTCGGTTTGAAGCTGCTTGGGTAGTTACGAACATATCATCCGGAACTTCAGAGAATATTAAGGTGCTAGTAGATCATGGGGCAGTACCAATACTTGTCGAGCTACTTAGTTCACCTAGTTATGATCTTCGGTACCAGGCTGTGTGGGCATTGGGAAACATTGCCGGTGATTCCCCTAGGTGCCGTGATCTTGTTTTCAGTCATGGTGCGCTGATCCCGCTGTTAACCCAGTTGAATGAGCAAGCAAAGCTTTCTATGCTGAGAGTTGCCACGTGGACCCTGTCAAGCTTTTGCAAAGGCAAGCCACCACCCCCAATTGAGCAGGTGAGGCCAGCGCTGCCCTCTCTTGAGCGTTTGATTTTGTCCAATGACGATGAAGAAGTCCTGAGTGATGCATGTTGGGCATTCTCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCTGTGATCGAGGCAGGTGTATGTGGCAGACTGGTGGAGCTTCTTCAGTACCCATCTCCTTCAGTGTTGACTCCTGTACTTCACACGCTGGGAAATATTGTTGCTGGGGACAATATGCAGACTCAGGCTATTATCAATCATGGTTCACTCCCATGCCTTTTGAGTCTGTTGACACATTTTCACGATAAAAGTATTAAGAAAGAAGCTTGCTTGACTATATCCAACATTACAGCTGGAAACAGAGAGCAGATACAAGCTGTTATTGAAGCTGGTCTAATTGCTCCCCTAGTAAATCTTCTTCAAAATGCCGATTTTGAAGTTCAAAAAGAAGCTGCATGGGCATTATTTAATGCTACATCTGGCGGTACCCATGAGCAAATCAAGTACTTGGTGACCCAGGGTTGCATTAAACCTCTGTGTGATTTGCTTGTTTGCCCTGATCCAACAATTGTTGCTGTCTGCTTAGAAGGTCTTGAGAATTTTCTGGAGGTTGGAGAAGCGGAGAAAAACTTTTGTAACACCGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGTTGAGGGATTGGAAAAGATTGAAAACTTGCAGAGTCACAACCACATTGAAATTTATGAGAAGGCTGTTAGAATCGTCGAGACATATTGGTTGGAAGGTGAGACCCTAACTCGAGGCCATGGTAGACAAGATCGGGATCTGAAATGTAAAATCCTACGCTTCTATGGTCTATGCACCCCTTGGTGTGCTCCTGTATGGTCGAAATCAAAATTTATTGGCCGTGGTCAGGATAGCTGCGAAAAATCTTTGTGGAAGCGGTGGAATCATGTGAAATGTAAATAA 1479 0.4361 MDEKMLESLPAIVAMVWSDDNSKQLEGATKFRKLLLTHNPPIEKIIQSFVVTRFLEFIPRDDFPKLRFEAAWVVTNISSGTSENIKVLVDHGAVPILVELLSSPSYDLRYQAVWALGNIAGDSPRCRDLVFSHGALIPLLTQLNEQAKLSMLRVATWTLSSFCKGKPPPPIEQVRPALPSLERLILSNDDEEVLSDACWAFSYLSDGTNDKIQAVIEAGVCGRLVELLQYPSPSVLTPVLHTLGNIVAGDNMQTQAIINHGSLPCLLSLLTHFHDKSIKKEACLTISNITAGNREQIQAVIEAGLIAPLVNLLQNADFEVQKEAAWALFNATSGGTHEQIKYLVTQGCIKPLCDLLVCPDPTIVAVCLEGLENFLEVGEAEKNFCNTGDVNLYAQMIDDVEGLEKIENLQSHNHIEIYEKAVRIVETYWLEGETLTRGHGRQDRDLKCKILRFYGLCTPWCAPVWSKSKFIGRGQDSCEKSLWKRWNHVKCK* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4966 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 261 304 IPR000225 GO:0005515
Mtr4g4966 492 Gene3D - 7 430 IPR011989 -
Mtr4g4966 492 Pfam Atypical Arm repeat 391 432 IPR032413 -
Mtr4g4966 492 PANTHER IMPORTIN SUBUNIT ALPHA 3 440 - -
Mtr4g4966 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 332 IPR000225 GO:0005515
Mtr4g4966 492 PANTHER IMPORTIN ALPHA 3 440 - -
Mtr4g4966 492 Pfam Armadillo/beta-catenin-like repeat 209 247 IPR000225 GO:0005515
Mtr4g4966 492 Pfam Armadillo/beta-catenin-like repeat 293 332 IPR000225 GO:0005515
Mtr4g4966 492 Pfam Armadillo/beta-catenin-like repeat 337 373 IPR000225 GO:0005515
Mtr4g4966 492 Pfam Armadillo/beta-catenin-like repeat 250 291 IPR000225 GO:0005515
Mtr4g4966 492 Pfam Armadillo/beta-catenin-like repeat 176 205 IPR000225 GO:0005515
Mtr4g4966 492 Pfam Armadillo/beta-catenin-like repeat 81 120 IPR000225 GO:0005515
Mtr4g4966 492 Pfam Armadillo/beta-catenin-like repeat 123 163 IPR000225 GO:0005515
Mtr4g4966 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 92 134 IPR000225 GO:0005515
Mtr4g4966 492 SUPERFAMILY ARM repeat 3 429 IPR016024 -
Mtr4g4966 492 SMART arm_5 208 248 IPR000225 GO:0005515
Mtr4g4966 492 SMART arm_5 81 121 IPR000225 GO:0005515
Mtr4g4966 492 SMART arm_5 167 206 IPR000225 GO:0005515
Mtr4g4966 492 SMART arm_5 38 79 IPR000225 GO:0005515
Mtr4g4966 492 SMART arm_5 250 291 IPR000225 GO:0005515
Mtr4g4966 492 SMART arm_5 336 376 IPR000225 GO:0005515
Mtr4g4966 492 SMART arm_5 122 164 IPR000225 GO:0005515
Mtr4g4966 492 SMART arm_5 293 333 IPR000225 GO:0005515
Mtr4g4966 492 PIRSF Importin_alpha 1 447 IPR024931 GO:0005737|GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4966 Mtr-Chr4 63832669 63836100 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4966 67 324 U-box Gene Family AT1G23030 22.481 3.35e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4966 K15042 - gmx:100808498 696.427