Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4965 ATGGTCTGGTCGGATGATAACAGCCAACAGTTGGAAGCAACTACCCACTTTCGAAAGCTTATCTCCACAATACATAACCCTCAGATTGATCATGTTATTCAATCTGGCGTTGTTCCTCGTTTTGTTGAATTTCTATTTAGGGACGATTTTCCTCAACTTCAGTATGAAGCTGCTTGGATACTCACGAACGTAGCAGGTGGAACTTCTGTGAACACTAAGGTGGTCATTGATCACGGGGCTGTACCAATACTTGTCAAGCTACTTAGTTCACCTAGCGATGATGTTCGAGAGCAGGCTGCGTGGACATTGGGAAATGTTGCCGGTGATTCCCCTAGTTGTCGTGATCTTGTTCTCAGTCATGGTGCGTTGATCCCGCTGTTATCCCAGTTGAATGAGCAAGCAAAGCTTTCTATGCTGAGAATTGCTACGTTGGCCCTGTCAAACTTTTGCAGAGGAAAACCACCACCCCCATTTGAGCAGGTGAGGCAAGCACTTCCTACCCTCAGGCGTTTGATTTTTTCCAATGATGAAGAAGTCGTGACAGAAGCATGCTGGGCACTCTCATATCTTTCTAAATATGGTTCAAATGACGAAATCCAAGCGGTAATCGAGGCTGGCATATGTGATAGACTAGTAGAGCTCCTTTTGCGCCCGTCTCCTTCAGTGTTGACTCCTGCACTTCAAACGGTGGGAAATTTTATAAAAGTGGATGATATGCAGACTCAGGCTATTATCAATCATGGTTTACTCCCATTCCTTTTGAGCCTGTTGATCCAAAACCACAAGGAAAGTATTAAGAAGGACGCTTGCTGGATTATATCAAACATTGTAGTTGGAAACAGGGAGCGGATACAAGCTGTTATCAAAGCTGGTCTGATTGCTCCCCTAGTCAATCTTCTTCAAAATGCCGAGCTTGCGATTAAAAAAGAAGCTGCATGGGCACTCCGTAATGCTACATCTGATGGTACTCATGAGCAAATCAAGTACTTGGTGAGCCATGGTTGCATTAAGCCTCTGTGTGATTTGCTTGTTTGCCCTGATCCAAAAATTGTTTCTGTCTGTTTAGATGGTCTTGAGAATTTTCTAAAGGTTGGAGAAGCGGAGAAAAGCTTTTGTAACACGGGAGATGTCAACTTGTATGCTCAGATGATAGATGATGTTGAGGGATTGGAAAAGATCGAAAACTTGCAGAGTCATGACAACAATGAAATTTATGAGAAGGCTGTTAAAATTCTTGAGACATATTGGTTGGAAGATGTTGATGAGACACTACCTCTAGGTCATCGTAAACTAGATCCCAATTTGAAACGTAAGATCGTACACTACTACAGTCTTGCCACCCCTTGGCGTGCTCGTGTACGACTGGAATCATATTTTGGTGGGAGTGGCCTAGATCGCCTTGAAAAATCGTGGGAGTGGTGGAATCATGTGAATCTTCCGATTCCGATCTTGGATTTCTCACATATATTTTCTCCAATTGGGTCCGCGTCCCGGCTCACTAAACGCGCCTTTTTTGGTTTAAAACCCTAA 1530 0.4366 MVWSDDNSQQLEATTHFRKLISTIHNPQIDHVIQSGVVPRFVEFLFRDDFPQLQYEAAWILTNVAGGTSVNTKVVIDHGAVPILVKLLSSPSDDVREQAAWTLGNVAGDSPSCRDLVLSHGALIPLLSQLNEQAKLSMLRIATLALSNFCRGKPPPPFEQVRQALPTLRRLIFSNDEEVVTEACWALSYLSKYGSNDEIQAVIEAGICDRLVELLLRPSPSVLTPALQTVGNFIKVDDMQTQAIINHGLLPFLLSLLIQNHKESIKKDACWIISNIVVGNRERIQAVIKAGLIAPLVNLLQNAELAIKKEAAWALRNATSDGTHEQIKYLVSHGCIKPLCDLLVCPDPKIVSVCLDGLENFLKVGEAEKSFCNTGDVNLYAQMIDDVEGLEKIENLQSHDNNEIYEKAVKILETYWLEDVDETLPLGHRKLDPNLKRKIVHYYSLATPWRARVRLESYFGGSGLDRLEKSWEWWNHVNLPIPILDFSHIFSPIGSASRLTKRAFFGLKP* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4965 509 SUPERFAMILY ARM repeat 2 421 IPR016024 -
Mtr4g4965 509 PIRSF Importin_alpha 1 434 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mtr4g4965 509 Gene3D - 1 417 IPR011989 -
Mtr4g4965 509 Pfam Atypical Arm repeat 378 422 IPR032413 -
Mtr4g4965 509 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 248 291 IPR000225 GO:0005515
Mtr4g4965 509 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 291 321 IPR000225 GO:0005515
Mtr4g4965 509 PANTHER IMPORTIN ALPHA 2 427 - -
Mtr4g4965 509 Pfam Armadillo/beta-catenin-like repeat 281 319 IPR000225 GO:0005515
Mtr4g4965 509 Pfam Armadillo/beta-catenin-like repeat 196 232 IPR000225 GO:0005515
Mtr4g4965 509 Pfam Armadillo/beta-catenin-like repeat 110 151 IPR000225 GO:0005515
Mtr4g4965 509 Pfam Armadillo/beta-catenin-like repeat 69 107 IPR000225 GO:0005515
Mtr4g4965 509 Pfam Armadillo/beta-catenin-like repeat 324 360 IPR000225 GO:0005515
Mtr4g4965 509 Pfam Armadillo/beta-catenin-like repeat 238 277 IPR000225 GO:0005515
Mtr4g4965 509 Pfam Armadillo/beta-catenin-like repeat 157 191 IPR000225 GO:0005515
Mtr4g4965 509 Pfam Armadillo/beta-catenin-like repeat 25 65 IPR000225 GO:0005515
Mtr4g4965 509 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 79 121 IPR000225 GO:0005515
Mtr4g4965 509 PANTHER IMPORTIN SUBUNIT ALPHA 2 427 - -
Mtr4g4965 509 SMART arm_5 323 363 IPR000225 GO:0005515
Mtr4g4965 509 SMART arm_5 280 320 IPR000225 GO:0005515
Mtr4g4965 509 SMART arm_5 195 235 IPR000225 GO:0005515
Mtr4g4965 509 SMART arm_5 110 151 IPR000225 GO:0005515
Mtr4g4965 509 SMART arm_5 153 192 IPR000225 GO:0005515
Mtr4g4965 509 SMART arm_5 25 66 IPR000225 GO:0005515
Mtr4g4965 509 SMART arm_5 237 278 IPR000225 GO:0005515
Mtr4g4965 509 SMART arm_5 68 108 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4965 Mtr-Chr4 63826359 63829720 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4965 11 320 U-box Gene Family AT1G20780 23.077 5.38e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4965 K15042 - gmx:100808498 701.434