Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4955 ATGAAACTCGACAACTCTAACTCCAATTCCAACGGCCAGGTGTCCTTACCCGCCGCCGCCGACGTTTCACCGCCGCGTAACTCCGACGACGCCGATGAAGCATTTGTGCCGCCGCTGAACTTCGCTATGGTTGACAACGGTATTTTCAGATGTTTGTGCCCTGAACCCTATCCAGAAGCAACTGCGGAATTTTTGAATGCTAACGGAATTAGGCTTTATCAATTCGGTATCGATGGCTGCAAGGAACCCTTTGTCAACATCCCAAATGATAAGATTCGTGAAGCTTTGAAAGTAGTGCTCGATGTTAGGAACCACCCCGTGCTGATTCATTGTAAACGAGGAAAGCACCGCACTGGTTGTCTTGTGGGATGCATACGAAGATTGCAGAGATGGTGTCTATCATCTATTTTTGATGAGTATCAAAGGTTTGCAGGTGCCAAAGCCAGAGTGTCGGACCAGAGGTTCATCGAATTGTTTGATATTTCCAGTTTGAAGCACAACCCACTGATATTTTCATGCTCAAGGAAATAG 531 0.467 MKLDNSNSNSNGQVSLPAAADVSPPRNSDDADEAFVPPLNFAMVDNGIFRCLCPEPYPEATAEFLNANGIRLYQFGIDGCKEPFVNIPNDKIREALKVVLDVRNHPVLIHCKRGKHRTGCLVGCIRRLQRWCLSSIFDEYQRFAGAKARVSDQRFIELFDISSLKHNPLIFSCSRK* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4955 176 PRINTS Plant and fungal dual specificity phosphatase signature 51 64 IPR020428 GO:0016791
Mtr4g4955 176 PRINTS Plant and fungal dual specificity phosphatase signature 70 84 IPR020428 GO:0016791
Mtr4g4955 176 PRINTS Plant and fungal dual specificity phosphatase signature 87 101 IPR020428 GO:0016791
Mtr4g4955 176 MobiDBLite consensus disorder prediction 1 30 - -
Mtr4g4955 176 ProSitePatterns Tyrosine specific protein phosphatases active site. 109 119 IPR016130 GO:0016311|GO:0016791
Mtr4g4955 176 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 35 161 IPR029021 -
Mtr4g4955 176 CDD PFA-DSP_Siw14 35 160 - -
Mtr4g4955 176 PANTHER TYROSINE-PROTEIN PHOSPHATASE 24 50 - -
Mtr4g4955 176 PANTHER TYROSINE-PROTEIN PHOSPHATASE 51 174 - -
Mtr4g4955 176 Gene3D Protein tyrosine phosphatase superfamily 34 163 IPR029021 -
Mtr4g4955 176 MobiDBLite consensus disorder prediction 1 17 - -
Mtr4g4955 176 Pfam Tyrosine phosphatase family 52 168 IPR004861 -
Mtr4g4955 176 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP1 51 174 - -
Mtr4g4955 176 PANTHER TYROSINE-PROTEIN PHOSPHATASE DSP1 24 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4955 Mtr-Chr4 63721865 63724826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4955 33 176 Protein tyrosine phosphatase (PTP) family AT4G03960 67.273 9.17e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4955 K18045 - gmx:100785520 293.508