Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4954 ATGGGGAAATCAGGTGGTAGAAGAAAGAAGGGTGGTGCTGTTGTTGACAATTCAGCTTCTGTCCAAACACCAAATGGTGGGGTTGAATTGGATTCATCAATTTTCTTGAAGAAGGCACATGAAATGAAAGAAGAAGGGAATAGAAGATTTCAGAGTAAGGATTATGCTGGTGCTCTTGAAAACTATGAGAATGCTCTGAAACTCACGCCCAAAACTCATCCTGATAGGGCTGTTTTTCACAGCAATAGGGCTGCTTGTATGATGCAAATGAAACCTATTGATTATGAATCTGTGATTTCTGAGTGTACTTTGGCTCTTCAGGTTCAGCCGCAATTTGTCCGGGCTTTGCTTCGTAGGGCTCGGGCGTTTGAGGCTGTTGGTAAGTATGAATTGGCTGTTCAAGACGTGCAGTTGTTATTGGCTTCTGATCCCAATCATAAGGATGCTTTGGATATTGCTCAGAGATTGAGGGCTGCTTTTGGGCCTCGTCAGGAAGCACAGCAGGATCTCCACAGTCGGCCTTCGCCTGCTGCGTTAGGTGCTTCTGCTGTCCGTGGTGCTCCTATTGCTGGATTAGGTCCGTGTTTGCCAGCACGGCCTGCGTCGAAGAAGGGGGTGAATTCTGCCGTTGGGTCAGTTGTTTCTCCTAATAACAAGGTTGACAAGTCTCAAAATGTTTTGCTGCCAACTGAAAATGGTCTAGAGAACAAGACCCAGATGCCGAAAGTTGTGTTGAAGCCTTTTAATAATGGTCCTGTTGTGCAATCCAACTCGAAAAATGAGAGCCAGAAGGATAGGAATCTGTCGGAGGTTGCTATTAGGTGGAGACCATTGAAGCTTGTTTATGATCATGACATCAGGCTTGCTCAGATGCCGGCGAACTGCAGTTTCAGAGTACTTAGAGATGTGGTAAGCAAAAGATTTCCTTCTTCAAATTCAGTTCTGATCAAGTACAAGGATTGTGATGGTGATTTGGTTACTATAACATCTACTGATGAACTCAGATTGGCTGAGTCCTTTGTGGATAGCAATCTGCTGAAAGAACTCGAATCAGATAAAAGTGATTCTATTTCGGTGCTGAGACTACATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTGTTGGAAGAAGAGGAAGAAAAACTTGTTGAGAATGAAGTGACCAAGGGAGATGAAAGTGGATCTCATTCTTCCCTCGGTGACTTTGTCCCTGAAGTTACAGAAGTCACTGAAGTTCCTGACACCGAGGTTGATAAGATAATAACAAAGAAGGATGTTTCAAAGGAAAAGCCAGGAGCAACGGGAGATAATGAATGCAAAGAAGTGGAGATGGATGACTGGCTCTTTGAATTTGCTCAGCTTTTCCGCTCACACGTTGGTATTGACCCTGATGCTCATATCGACTTGCATGAGCTTGGGATGGAGCTATGTTCAGAGGCACTTGAAGAAACAGTGACAAGTGAGGAGGCTCAGGATTTATTTGATAAGGCTGCTTCAAAGTTTCAGGAGGTGGCAGCATTGGCATTCTTCAACTGGGGTAATGTTCACATGTGCGCTGCTAGGAAGCGAATTCCCCTAGATGAGTCTGCTGGTAAAGATGTAGTGGCAGAACAACTTCAAGTGGCTTATGACTGGGTCAAGGAAAAGTATTCTTTGGCACGAGAGAAGTATGAGGAAGCACTCTTGATCAAACCTGATTTCTATGAGGGACTGTTGGCTCTGGGCCAACAACAATTTGAAATGGCCAAGCTCCATTGGTCTTTTGCAATTGCTAAGAAGATAGACCTATCAACATGGGATTCAACGGAAACTCTTCAATTGTTTAACAGTGCTGAGGAGAAGATGAAATCTGCGACTGATATGTGGGAGAAGTTGGAGGAACAGAGGGCAAAGGAACTGAAGGACCCAACTGCAACAAAGAAAGAAGAATTGTTGAGAAGAAGAAAGAAACAGGGAAGTGCTACTGAAGGCGAGTCTTCTGTTGTTGGAGGTCAGGGTGAGATATCTGCTGAAGAAGCTGCTGAGCAAGCAGTGGTCATGAGATCACAAATTCATCTTTTTTGGGGTAACATGCTTTTCGAAAAATCCCAAGTGGAATGCAAATTAGGAATGGATGGTTGGAAGAAAAATCTGGATGCTGCAACAGAACGCTTTAAGCTTGCAGGAGCTTCTGAGGCAGATATTTTGATGGTTCTAAAGAATCACAGCTCAAACGGTGATACAAAAGGTGATGATAAAAAGGTCCAAAGTCCACTTTCCAACAAGACCGATGAACTAGAGATCAACAAGGAGGCCAATCAAGTATGA 2310 0.4403 MGKSGGRRKKGGAVVDNSASVQTPNGGVELDSSIFLKKAHEMKEEGNRRFQSKDYAGALENYENALKLTPKTHPDRAVFHSNRAACMMQMKPIDYESVISECTLALQVQPQFVRALLRRARAFEAVGKYELAVQDVQLLLASDPNHKDALDIAQRLRAAFGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPASKKGVNSAVGSVVSPNNKVDKSQNVLLPTENGLENKTQMPKVVLKPFNNGPVVQSNSKNESQKDRNLSEVAIRWRPLKLVYDHDIRLAQMPANCSFRVLRDVVSKRFPSSNSVLIKYKDCDGDLVTITSTDELRLAESFVDSNLLKELESDKSDSISVLRLHIVEVSPEQEPPLLEEEEEKLVENEVTKGDESGSHSSLGDFVPEVTEVTEVPDTEVDKIITKKDVSKEKPGATGDNECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKDVVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFAIAKKIDLSTWDSTETLQLFNSAEEKMKSATDMWEKLEEQRAKELKDPTATKKEELLRRRKKQGSATEGESSVVGGQGEISAEEAAEQAVVMRSQIHLFWGNMLFEKSQVECKLGMDGWKKNLDAATERFKLAGASEADILMVLKNHSSNGDTKGDDKKVQSPLSNKTDELEINKEANQV* 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4954 769 ProSiteProfiles TPR repeat profile. 39 72 IPR019734 GO:0005515
Mtr4g4954 769 SUPERFAMILY CAD & PB1 domains 273 339 - -
Mtr4g4954 769 MobiDBLite consensus disorder prediction 736 769 - -
Mtr4g4954 769 PANTHER - 1 759 - -
Mtr4g4954 769 Coils Coil 609 629 - -
Mtr4g4954 769 CDD PB1 278 350 - -
Mtr4g4954 769 Pfam PB1 domain 275 366 IPR000270 GO:0005515
Mtr4g4954 769 Gene3D - 277 349 - -
Mtr4g4954 769 MobiDBLite consensus disorder prediction 629 668 - -
Mtr4g4954 769 ProSiteProfiles PB1 domain profile. 275 367 IPR000270 GO:0005515
Mtr4g4954 769 SUPERFAMILY TPR-like 36 170 IPR011990 GO:0005515
Mtr4g4954 769 SMART tpr_5 39 72 IPR019734 GO:0005515
Mtr4g4954 769 SMART tpr_5 113 146 IPR019734 GO:0005515
Mtr4g4954 769 SMART tpr_5 77 112 IPR019734 GO:0005515
Mtr4g4954 769 SUPERFAMILY TPR-like 489 585 IPR011990 GO:0005515
Mtr4g4954 769 SMART PB1_new 275 367 IPR000270 GO:0005515
Mtr4g4954 769 PANTHER PROTEIN CLMP1 1 759 IPR044517 -
Mtr4g4954 769 MobiDBLite consensus disorder prediction 629 655 - -
Mtr4g4954 769 MobiDBLite consensus disorder prediction 739 763 - -
Mtr4g4954 769 MobiDBLite consensus disorder prediction 1 26 - -
Mtr4g4954 769 Gene3D Tetratricopeptide repeat domain 36 160 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4954 Mtr-Chr4 63709428 63712385 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4954 36 157 Calmodulin-binding Proteins AT3G25230 30.075 6.17e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4954 - - gmx:100786963 1172.92