Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4952 ATGAGTCAACTCGGTCTCATATTGCAGGAATCACTTCGTTCTCAGAGAGAATCAAGAACCATTCTCGGTTTATTAACCGAACAAATGGACGCTTTAGATTCAGGAACCACCAGAAGACGCAGTCTTAAAGAACGCTTCAGATTCACCGGTATGGGTTGTTGTGGTGCCACCTGGGTTTTCCGTCCAATTATCCGCCATGAACATCATCATCAACGAAACGAAGAAGGTGAAGCTACGGTTGAACAACAGCAACAGCTACAAGTTCAAGATCAAGATCCGAACCCAGTTGAACCGGAATGTGAAGCTCCGGCGGGTTCGTCTGGTTCTGGAATGAATCTAGCGGCGGCTTTGGCGGCGGAGCGGCAAATGAGGGTATCGGAGGAAGCCAGTGGCGGAGAAGGAGCAACGCCGTGGAGAGTTTCGTTGATGAAACTGTTGGAGGAAACGGAAGGTGAAAATGAGAGTAATGCTGGTGCGGTAGTTGTGGAAGGGAGTGATTCGGTGTGCTGCGTGTGCATGGGAAGAAAGAAAGGTGCAGCGTTCATACCGTGTGGACACACTTTTTGCAGAGTGTGTTCAAGGGAACTGTGGTTGAATCGAGGAAATTGTCCCCTTTGTAATCGTTCTATTCTCGAGATTCTCGATATTTTCTGA 654 0.4832 MSQLGLILQESLRSQRESRTILGLLTEQMDALDSGTTRRRSLKERFRFTGMGCCGATWVFRPIIRHEHHHQRNEEGEATVEQQQQLQVQDQDPNPVEPECEAPAGSSGSGMNLAAALAAERQMRVSEEASGGEGATPWRVSLMKLLEETEGENESNAGAVVVEGSDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4952 217 MobiDBLite consensus disorder prediction 69 109 - -
Mtr4g4952 217 SUPERFAMILY RING/U-box 168 214 - -
Mtr4g4952 217 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 217 - -
Mtr4g4952 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 162 216 IPR013083 -
Mtr4g4952 217 CDD RING-HC 169 206 - -
Mtr4g4952 217 ProSiteProfiles Zinc finger RING-type profile. 169 207 IPR001841 -
Mtr4g4952 217 Pfam Zinc finger, C3HC4 type (RING finger) 166 211 - -
Mtr4g4952 217 PANTHER OS01G0917900 PROTEIN 18 217 - -
Mtr4g4952 217 SMART ring_2 169 206 IPR001841 -
Mtr4g4952 217 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4952 Mtr-Chr4 63694573 63695826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4952 21 217 C3H Transcription Factor Family AT4G22250 50.971 1.39e-56 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4952 - - gmx:100792613 271.166