Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4948 ATGATCTTTGATGGAACAGTGATAATGCTTCTTGGTGTCCAAAACTCACATATGGAAGAACTTATTTGTGTTGAAAATCGTCAAGATGACATTTTCAAATTTGATGAAGAAGTCATTGAAGTTCAATGCGAAACATCACGAAACAATAATAGAGAAGAAGCAGAACTATCATTTTCTGAATGGTTGGAGGTGGATGAGCATCTGGCTGTGTGGTTCAAGTGGAAAGAGAATTGGCATGCAGGAATCAAATGTGCAAGTGCTGATTGGCCATTATCAACCATAAAAGCCAAACCAACTAATGATAATGAGCAGAACAAATATATTGTAATTTTTTCGCCAGAAACAAGGAACTATTCATGGGTTGATATGCTTCTTGTTAAATCAATTCATGAGTTTCCTCAACCAATAGCATATGAAACTTATCATGAAGGATTGAAAATGGTACAAGACTTGACAATTGCACGACAATTTATAATGCAAAAGCTCGCCGTCGAAATGCTCTACATTATTAATCAGTTTCATCTTAATGCTTTGATAGAAGCTGCTCGTAATGTGCTGGTTTGGAAGCAGTTTGCTATGGAAGCTTCTCATTGTCGTCGTTATTTAGATCTTGGAATAATGGTTCAGAGGTTGCAAAAGAACATAATGCATTGCTACATAAAAGATAATTGGAAATTACATTCATCTGAGTCTTGGGCTGAAAGATGCCAAGGTGCAAACAATGCTCAAACAGTAGAGCTGCTTCAGGAGGAATTGTTTGATTCTATTTTGTGGAATGATGTCCACACTCTCCGTGATGCACCGGCACAACAAAACTTATGTTTTGAATGGAATACATGGAACCATGATGTGATGAAATGGTTTTCCACATTTCTTTCCTTTTCTAGTAGCAGTGACACGCAACAGCATGCTTCTGGCTCTGATGGTATGCACCAAGCAAGCCTTCAAGTTGGCAGCAAAAGGCCTAAACTTAAAGTTCATCGTGCATATACACATTCTAGGAAAGAAGGCACTGTGGAGGTACCCATGGTAACTGAGTTTCCTAGTCAATTGATCAGCCCAGTGAGTGAAACTGTAGTTCAGTCTGTAGATTCTGAGATCTTGTTCAACAATGGAACAATATCAAGGCCTTTGGATGAAACGGTTGTTCAAATATCTGAAGAACATGATGCTAAGGAAGGGATTTTGGATCGACAATGTCAAGCATATGTCGAATCCAAGGGAAGGCAGTGTAAAGAAAAAAGTGTTAAAGTTCTTACTCCATACTGTGGAGGAACAACTATTGATGGTTCTAGATGTAAGAATCATTCTCTTCCCAGTTTCACCTTTTGCAAGAAACATCTCTGCATTGCTGACAGAAACAACCGTTCAAATTCAAACTGTCATACGTTGAAGAGGAAATATGAAGAAAGTTGTAGTGGTCAAAAAAATCCATTGGAGATCGATACAGTGTTGATCATTGATGATGATGATTCTTTTTGTGCAAAGAATATCCTAGGTGAAACACTCATGCTTTCCGGTAATGATCACAATGAAATCGATGCTTTTCGGCAGACAGAGTCTTCTAACCATGGTAATGATCATAATAAAGACTCTTGTTTTCATAATGAGAATATTAATAAGTGTAAGATTTGCTTTGAAGAATTTGCTAATGACCAAACACTTGGCGATCATTGGATGGAAAATCATAAAAAAGAAGCACAATGGTTATTTAAAAGTTATGCTTGTGCCCTTTGTTTTAATTCCTTCACTAACAAGAATCTATTGGAATCACATGTTCAGAAGGGACACTGTGTGAAATTTGATGAAAACTGCTTGCTTTTACTATGTATTCCTTGTGGTGAATATTTTGGAAATATGGAGGAATTATGGTTGCATGTTAAGTCAGTTCACCCTGCCGAACTTAAGCTTTCAAAATCTCCTAAGCAACTAAGTTTGTCTACCGGTGATGTTTCTCTGGAAGTGACTGGAAAAGGAAATGAGATGGGGGAAACATCTATGCAGCAGCCCCAATGCTTAGAAGTTGCAAATATTTTCTCTTCCGATATTCAGAAGACCAAAGATCAGCCTAATAATCTTGATATTTTATCAAACGCTTGCACTGCATGCTGTAAACAAAACTTGACGGAAAAATCTACAAATGTATCAGATCCTGCAAGTATTGTAATGGAGCAAGATGAGTCTCAGTCCATCATAAATTCAAATTATGCAAGATTAGGGTCGTCGCAAAAGGCTCTAGTGTTATGTGATGACATAAGTTGTGGGATGGAATCAACTCCAGTGATTTGTGTAGTAGATCAAAATATACTAAACTCTCTTTTTGAGCAAGAGCAACAATATATAAATCTTCCTAGGCCTTGGATGAACTTTACCTATGTGACAAAACCGATGCTTGGTGCATCGTCTCGTCTTGATTTTTATGAGGGTCAGCAACTGAAATGTTATTGCTCATCTTCTACCTGTTGTTGTGAAACTTGTGATCATGTATACCTTTTTGATAATGATTATGATACTGCAAAAGACATATTCGGAAAAACAATGCACAAAAAGTTCCCATATGACAACAATGGTCGAATCATATTGGAGGAAGGTTATCTTGTGTATGAGTGCAACGATAAGTGCAGATGTGATAAAACCTGTCCAAACAGAATATTGCAGAATGGAATTCGCGTTAAGCTGGAAGTGTTTAAAACAGAGAAAAAGGGATGGGGTGTAAGGGCTGGCGAGGCTATTTCGCGCGGAACATTTGTGTGTGAGTACATTGGAGAGGTTTTAGAAGAGCAAGAGGCACACAACAGATGCAAAAGTTATGGAGAAGAACATTGCAGTTATTTCTATGTTGTTGATGCTCGTGTTAATGACATGAGTCGATTGATCGAAAGACAGGCCCAATATATCATTGATTCTACTAGATATGGAAATGTGTCTCGATTCGTTAATAATAGTTGTTCACCAAATCTTTTGAGTTACCAAGTTCTTGTGGAGAGCATGGATTGTAAGCGTTCACGTATTGGTCTCTACGCAAGTCGAGATATTGCTTTTGGTGAAGAACTGACATGTAATTATCACTATGAGCTTGTTCTTGGAAAAGGATCTCCTTGTCTTTGTGGATCTTCAAAATGCCGAGGACGCCTTTACTAG 3141 0.3779 MIFDGTVIMLLGVQNSHMEELICVENRQDDIFKFDEEVIEVQCETSRNNNREEAELSFSEWLEVDEHLAVWFKWKENWHAGIKCASADWPLSTIKAKPTNDNEQNKYIVIFSPETRNYSWVDMLLVKSIHEFPQPIAYETYHEGLKMVQDLTIARQFIMQKLAVEMLYIINQFHLNALIEAARNVLVWKQFAMEASHCRRYLDLGIMVQRLQKNIMHCYIKDNWKLHSSESWAERCQGANNAQTVELLQEELFDSILWNDVHTLRDAPAQQNLCFEWNTWNHDVMKWFSTFLSFSSSSDTQQHASGSDGMHQASLQVGSKRPKLKVHRAYTHSRKEGTVEVPMVTEFPSQLISPVSETVVQSVDSEILFNNGTISRPLDETVVQISEEHDAKEGILDRQCQAYVESKGRQCKEKSVKVLTPYCGGTTIDGSRCKNHSLPSFTFCKKHLCIADRNNRSNSNCHTLKRKYEESCSGQKNPLEIDTVLIIDDDDSFCAKNILGETLMLSGNDHNEIDAFRQTESSNHGNDHNKDSCFHNENINKCKICFEEFANDQTLGDHWMENHKKEAQWLFKSYACALCFNSFTNKNLLESHVQKGHCVKFDENCLLLLCIPCGEYFGNMEELWLHVKSVHPAELKLSKSPKQLSLSTGDVSLEVTGKGNEMGETSMQQPQCLEVANIFSSDIQKTKDQPNNLDILSNACTACCKQNLTEKSTNVSDPASIVMEQDESQSIINSNYARLGSSQKALVLCDDISCGMESTPVICVVDQNILNSLFEQEQQYINLPRPWMNFTYVTKPMLGASSRLDFYEGQQLKCYCSSSTCCCETCDHVYLFDNDYDTAKDIFGKTMHKKFPYDNNGRIILEEGYLVYECNDKCRCDKTCPNRILQNGIRVKLEVFKTEKKGWGVRAGEAISRGTFVCEYIGEVLEEQEAHNRCKSYGEEHCSYFYVVDARVNDMSRLIERQAQYIIDSTRYGNVSRFVNNSCSPNLLSYQVLVESMDCKRSRIGLYASRDIAFGEELTCNYHYELVLGKGSPCLCGSSKCRGRLY* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4948 1046 Pfam SET domain 902 1022 IPR001214 GO:0005515
Mtr4g4948 1046 ProSiteProfiles Pre-SET domain profile. 812 888 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr4g4948 1046 ProSiteProfiles Zinc finger C2H2 type domain profile. 608 636 IPR013087 -
Mtr4g4948 1046 SMART set_7 891 1029 IPR001214 GO:0005515
Mtr4g4948 1046 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 661 1046 - -
Mtr4g4948 1046 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 19 661 - -
Mtr4g4948 1046 ProSiteProfiles Zinc finger C2H2 type domain profile. 574 597 IPR013087 -
Mtr4g4948 1046 SUPERFAMILY SET domain 741 1036 IPR046341 -
Mtr4g4948 1046 Pfam Pre-SET motif 754 883 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr4g4948 1046 ProSiteProfiles SET domain profile. 891 1023 IPR001214 GO:0005515
Mtr4g4948 1046 ProSiteProfiles Post-SET domain profile. 1030 1046 IPR003616 -
Mtr4g4948 1046 SMART c2h2final6 574 597 IPR013087 -
Mtr4g4948 1046 SMART c2h2final6 540 563 IPR013087 -
Mtr4g4948 1046 SMART c2h2final6 608 631 IPR013087 -
Mtr4g4948 1046 ProSitePatterns Zinc finger C2H2 type domain signature. 610 631 IPR013087 -
Mtr4g4948 1046 SMART preset_2 749 875 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Mtr4g4948 1046 ProSitePatterns Zinc finger C2H2 type domain signature. 576 597 IPR013087 -
Mtr4g4948 1046 ProSitePatterns Zinc finger C2H2 type domain signature. 542 563 IPR013087 -
Mtr4g4948 1046 Gene3D SET domain 741 1046 IPR046341 -
Mtr4g4948 1046 Pfam Zinc finger C2H2-type, 3 repeats 576 654 IPR040689 -
Mtr4g4948 1046 PANTHER SET DOMAIN PROTEIN 661 1046 - -
Mtr4g4948 1046 PANTHER SET DOMAIN PROTEIN 19 661 - -
Mtr4g4948 1046 Gene3D Classic Zinc Finger 540 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4948 Mtr-Chr4 63620517 63626121 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4948 568 652 C2H2 Transcription Factor Family AT2G23740 45.882 2.48e-19 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr4g4948 Pre-SET 7.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4948 - - mtr:MTR_4g132610 2098.55