Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4945 ATGACATTAAGAATGGAGGTAGTAGTTCCTAGACAAGAACAGTCAAATCAACATTCCGAGGATATGCTGAAGTTCTCTGGATGCGCAAAAGCTTTTGGAAATTCAAAGAGAAAGGCTGAAGAATTTCATGAGTGTGGTGGTAATGAAAAACCGGAACCAGAAGGAAAAGGAAATACTATGGGATGTTTGAAGGAGTATAAAGTTTCACAAGAAAATTTTGGAATTTCACATAAGAGAAGATTTCAAGAATATCATACACATCAAACCGATACAAATTCAAAAGGGCAGAAAGATGTTCTGGAATGTTTAAAAGAGACACCCAATCTAGCATCTAAGAAGAGAGATGGATCAAAGAAGCTTGCTGCCTCAAAGAAGAAACGGAAACTTGAAGACGAACTCTTGCTTGACGAACTTGAACAAGATGAAGAAATGCTTTTTCTTCTTAAGACAAAGAACAGGAGCAGAACTGGTAGAATCAATAACATAATGCAGGGTGTTCAACAAAATAACCGGAAATGTCATCAGTGCATGAAAAAGGAAAGAACATCTTTTGTGCCTTGCACTAAATGTTCAAAAATGTACTGTATGCGATGCATCAATCAATGGTACCCTGATATGTCTACAGAAGAAGTTGCTGAAAGTTGCCCATTTTGCATTAAAAATTGCAATTGCAATGTTTGCCTGCGTTCAAAAGGAACAATTAAGACATCTAACATGGACATCACCAATTATGAAAAAGCTCAGTATCTGCATTACATGATCAACTTACTCCTTCCATATCTGAAACAAATTTGTCATGAACAATGTGTAGAGGAAGATATAGAAGCAAAAATACAAGGAAAATCTTCTGAGATTGAGATACCCCAAAGTCTTTGTGGTGACAAGGAACGTGTCTATTGTGATCATTGTGCTACTTCAATTGTTGACCTTCATCGAATCTGCCCAAATTGTTCCTATGAGCTTTGCCTCAAATGTTGCAAAGAAATACGTGAAGGAAGCATTACACCCCGACCTGAGATGAAGTTCCAGTATGTGAATAGGGGCTATGATTATATGCATGGTGGTGACCCTCTACCAGTGTCTTGTGATTTAGAGACTTCAGATTGTCATATATCTACCGAGTGTAATGCCAGGAGTGATGGAAGTGTTAGTTGTGTCCCAAAAGAGATGGGGGGTTGCGGTAGTTCTCTGTTGGAGCTGAGGCGTATCCTCCCACATGGGTGGATGTCTGACTTGGAAGACAAAGCTCGCAGTATGCTGAAAATTTGGGAAATTAAACAAACTACTCTTCAGCATGAAGAAGCTGTATCGAGCTATGGTTCAGAATCAAAAAGCAGTTTAAAAGAAGGGATGTTGCTCTTCCGAAAACATTGGACAAATGGTGAACCAATTATTGTTCGTGATGTTCTAAAACATGGGACAGGTCTGAGCTGGGAGCCGATGGTCATGTGGCGAGCATTGTGTGATAATTTGGCTTCAGATATCAGTTCAAAAATGTCAGAAGTGAAGGCCATCGATTGCATGGCTAATTGTGAGGTTGCAATTAATACTCGTATGTTCTTTAAAGGTTATATAGAGGGAAGAACATATGGAAATCTCTGGCCAGAGATGCTGAAGCTAAAAGACTGGCCCCCTTCTGATAAATTTGAAGATCTTTTGCCCCGTCATTGTGAAGAATTTATTCGTTTCTTGCCATTTCAACAGTATACTGATCCTCGGGCTGGAACTCTCAATCTGGCTGTAAAGTTGCCAGCCCATGTTCTAAAACCTGATATGGGTCCAAAAACATATATTGCTTATGGGATTAGAGAAGAACTTGGCAGGGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTAACCCATACAGCAGAGGTATTATTAACTGATAGGCAGAAGTCTACTATTTCCAATTTGAAAGAAGCACACAGAGCACAAGATGAGAGAGAACACCGTGCTCCACAGAGGGCTGATGTATGCCTAAATGGTCGACCTTGCGACAGCAGAGAACATATAGAAAATAAGGAGGTACTAGAGTGCAACAATATGGATAACCGTCCTATCGAAATCAGTGGAGACATCTTTCACAATGTGTCTGAGGGGGGAACTTTTCCTGCCATTTCTACAGAAAATGAAACAATGGTAACAGGTAGTGCCCTGTGGGATATATTTCGGAGAGAGGACACTGAAAAGTTAGGAGCATATCTTAGAAAACACTCGAAAGAATTCAGGCATACTTATTGTTCACCGGTTGAGCAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCACAAGAATAAGTTGAAGGAGGAGTTTGGGGTAGAACCGTGGACTTTTGAGCAAAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGCCCACATCAAGTCAGGAATCTTAAGTCGTGCACAAAGGTTGCTGTAGACTTCGTGTCCCCAGAAAATGTACATGAGTGTCTTCGTTTAACTGAAGAATTCCGTCAGCTTCCCAAGAAACACAAAGCTAGAGAAGATAAACTTGAGATACAGAAGATGATAGTTTACGCCATTGATCAAGCTGTCAAAGACCTAGAAGCTTTACTGAATTGTTCCTGA 2628 0.4011 MTLRMEVVVPRQEQSNQHSEDMLKFSGCAKAFGNSKRKAEEFHECGGNEKPEPEGKGNTMGCLKEYKVSQENFGISHKRRFQEYHTHQTDTNSKGQKDVLECLKETPNLASKKRDGSKKLAASKKKRKLEDELLLDELEQDEEMLFLLKTKNRSRTGRINNIMQGVQQNNRKCHQCMKKERTSFVPCTKCSKMYCMRCINQWYPDMSTEEVAESCPFCIKNCNCNVCLRSKGTIKTSNMDITNYEKAQYLHYMINLLLPYLKQICHEQCVEEDIEAKIQGKSSEIEIPQSLCGDKERVYCDHCATSIVDLHRICPNCSYELCLKCCKEIREGSITPRPEMKFQYVNRGYDYMHGGDPLPVSCDLETSDCHISTECNARSDGSVSCVPKEMGGCGSSLLELRRILPHGWMSDLEDKARSMLKIWEIKQTTLQHEEAVSSYGSESKSSLKEGMLLFRKHWTNGEPIIVRDVLKHGTGLSWEPMVMWRALCDNLASDISSKMSEVKAIDCMANCEVAINTRMFFKGYIEGRTYGNLWPEMLKLKDWPPSDKFEDLLPRHCEEFIRFLPFQQYTDPRAGTLNLAVKLPAHVLKPDMGPKTYIAYGIREELGRGDSVTKLHCDMSDAVNILTHTAEVLLTDRQKSTISNLKEAHRAQDEREHRAPQRADVCLNGRPCDSREHIENKEVLECNNMDNRPIEISGDIFHNVSEGGTFPAISTENETMVTGSALWDIFRREDTEKLGAYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTLEHKNKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVHECLRLTEEFRQLPKKHKAREDKLEIQKMIVYAIDQAVKDLEALLNCS* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4945 875 Gene3D Cupin 442 847 - -
Mtr4g4945 875 ProSiteProfiles Zinc finger RING-type profile. 173 218 IPR001841 -
Mtr4g4945 875 ProSiteProfiles JmjC domain profile. 572 838 IPR003347 -
Mtr4g4945 875 SMART cupin_9 553 838 IPR003347 -
Mtr4g4945 875 Pfam JmjC domain, hydroxylase 718 821 IPR003347 -
Mtr4g4945 875 SUPERFAMILY Clavaminate synthase-like 453 872 - -
Mtr4g4945 875 MobiDBLite consensus disorder prediction 1 21 - -
Mtr4g4945 875 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 58 874 - -
Mtr4g4945 875 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 168 239 IPR018866 -
Mtr4g4945 875 CDD cupin_RmlC-like 762 822 - -
Mtr4g4945 875 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 58 874 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4945 Mtr-Chr4 63586221 63592065 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Mtr4g4945 JmjC 3.1e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4945 K15601 K21989 gmx:100797860 1207.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4945 4 63586221 63592065 Mtr4g4945 4 63586221 63592065 ECH