Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4942 ATGGCCATTTCAACTTCACTCCTCTTACTTTCATGCTTCTTACTACCAATTGTTCTAAGCTTTGTTAATGCCTATTCCAAAGAGAACTACTATAACACTAACAAACCATACCTCAACAAGATAGATTCTTGTTGGCGCGCCAAACCGAATTGGGCGTTGAATCGAAAAGCCTTAGCTGATTGTGCTATTGGTTTTGGCAAAGATTCAATTGGAGGCAAATATGGTGCAATATATATTGTTACAGATTCCTCCGATGACCCTGCAAATCCAAAACCAGGTACACTTCGTTATGGCGCGATACAAACGAAGCCGCTTTGGATCATTTTCGAAAGGAACATGGTTCTTACTCTAAAGAATGAACTTATTATGAATAGTTACAAGACTATTGATGGTAGAGGAGTTAAAGTTGAGATTGGAAATGGACCTTGTATTACAATACAAGGTGTTAGTCATGTTATTATACATGGAATTAGCATTCATGATTGTAAACCAAGTAAAGCTGGACTTGTTAGAAGTACTCCTGATCATGTCGGCCGTCGTCGAGGTGCCGATGGCGATGCTATTAGTATATTTGCTTCCTCAAATATTTGGATTGATCATTGCTTTTTGGCTCGTTCAACTGATGGACTAATTGATATTATTCATGCCTCAACTGCTATTACCATTTCTAACAATTACTTCACCCAGCATGACAAAGTTATGTTGCTAGGACACAATGATGAATACACTGCAGATAAGATAATGAAAGTAACAATAGTCTTCAATCGGTTTGGCAGTGGGCTAATTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCTCATGTGGTGAACAACAAATATGATCAGTGGCAAATGTATGCTATAGGAGGAAGTGCTAACCCAACCATTTTAAGTGAAGGCAACTTTTATAATGCACCAAATGACCATACTAAAAAAACAGATTACCAAGAGGGAATCAAAGGGAAATTGGAAGAGTTGGAAATGGAGATCTTCAAAGGATTATTTTTCAAATGGTGCTTATTTTATACCATCTGGATATGGAAGTTGTGCACCAAATTATACACCTGCTCAATCTTTTGTGGCTGTTCCAGGTTATATGGTACCTGCTATAACTCTCAATGCAGGTCCATTGAGTTGTTTTGTTGGGAGGTCATGTTAATATAG 1164 0.3789 MAISTSLLLLSCFLLPIVLSFVNAYSKENYYNTNKPYLNKIDSCWRAKPNWALNRKALADCAIGFGKDSIGGKYGAIYIVTDSSDDPANPKPGTLRYGAIQTKPLWIIFERNMVLTLKNELIMNSYKTIDGRGVKVEIGNGPCITIQGVSHVIIHGISIHDCKPSKAGLVRSTPDHVGRRRGADGDAISIFASSNIWIDHCFLARSTDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDEYTADKIMKVTIVFNRFGSGLIERMPRVRFGYAHVVNNKYDQWQMYAIGGSANPTILSEGNFYNAPNDHTKKTDYQEGIKGKLEELEMEIFKGLFFKWCLFYTIWIWKLCTKLYTCSIFCGCSRLYGTCYNSQCRSIELFCWEVMLI* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4942 387 SMART amb_all 112 309 IPR002022 -
Mtr4g4942 387 Gene3D - 38 336 IPR012334 -
Mtr4g4942 387 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Mtr4g4942 387 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Mtr4g4942 387 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Mtr4g4942 387 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Mtr4g4942 387 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Mtr4g4942 387 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Mtr4g4942 387 PANTHER PECTATE LYASE 1 341 - -
Mtr4g4942 387 Pfam Pectate lyase 120 303 IPR002022 -
Mtr4g4942 387 PANTHER PECTATE LYASE 18-RELATED 1 341 IPR045032 GO:0030570
Mtr4g4942 387 SUPERFAMILY Pectin lyase-like 39 312 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4942 Mtr-Chr4 63549461 63551252 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4942 8 312 Polysaccharide Lyase AT1G11920 70.492 4.44e-160 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4942 K01728 - gmx:100807483 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4942 4 63549461 63551252 Mtr4g4942 4 63549461 63551252 ECH