Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4940 ATGTTAACATTTCCGACGATGAATCTAATAAGCACAAACGGAGGAGCAACATGGTGTGATGAGAATGAGAATGAAGATGATGAAAACCGCGGCGGTGGCATGAATCGTGTAACTATGGATGAAGTTGATTTCTTCTCAAATGATAAATCAGAACAACAACAACAACAACAACTTGATGATCATGTTTCAATCAAGAAGACTAACAATAATCAGATTTACGATCCTCATTGCAATCTCCGCGCTCACCATGTCAACACCGGTTTACAACTCCTTATTACAAACACTGGAAGTGATCAATCAATGATGGATGATAGAACTTCAATAAATGCTCAAGATAATAAGCGTGCCAAGACTCAACAGACTGATCAATTGCAAGAGGAGCTTGGTCGTGTTAATGCAGAGAACCAAAAGCTGAAGGACATGCTTAGTGACATGAACAGTAGCTACACAAACTTGCATAACCGTTTTATATCCTTAATGCAACAGCAACAGAACCAAACCACAGAACATGATCATATTGTCAATGGAAAAGCTGTGGAGAAAGGAGATGGTGTGGTGGCTAGAAAGTTCATGAATGGTCCAGCAGCAGAAGTAGATGATCAGCAAGAGCCTGAACCATGCACACCTCAGAACAATCATAAAGAGCCTGATCCGGACGCATCAGAACTAGTACAACTTTTGGACCGAAGTCAGCTTCCCAGATTAAACCCCTCCAACGCTGCTGATCAAGCCAATGCAGAAGCCACTATGAGAAAAGCACGAGTCTCAGTCCGTGCTAGATCAGAAGCCCACATGATCAATGATGGATGCCAATGGCGAAAATACGGACAAAAAATGGCTAAAGGAAACCCTTGTCCTCGTGCCTATTATAGATGCACAATGGCTCTTGGTTGCCCCGTTCGCAAACAAGTTCAACGATGTGCGGAGGACAGATCAATTTTGATAACAACATATGAAGGGACACATAGCCATCCACTCCCACCTGCTGCTATGCCAATGGCATCGACCACCGCAGCTGCTGCTACCGTGTTACTATCTGGGTCAATGTCAAGTGCTGATGGGGTGATGAACCCCAATTTACTAGCCAGAATTCTTCCTAATTGCTCTTCTAGCATGGCCACACTCTCAGCATCAGCACCATTTCCTACTGTGACACTAGACCTTACACGCGACACTACAGATAATAACGGAAATTCTCCTTCCCAATTCCAGCTTGGACAGCCTCAAAACTTTGGATCAGGACAATTACCACAGGTGATTGCACAAGCACTTTATAACCAATCCAAATTCTCCGGCCTTCAAATGTCTCAAGATGTTGGAGGCTCTTCCCAGTTGCATCCAACTCAACAGGCATCATCACTAAGTGCCGCCATCACCGCGGATCCAAACTTCACGGCAGCACTCGCAGCTGCTATCTCCTCCATAATTGGTGCTGCTCCTCCCAGCAACAATAACAGTAATCCCAATATCATCAACAGTGCTACCTACAATCAGTAG 1497 0.4442 MLTFPTMNLISTNGGATWCDENENEDDENRGGGMNRVTMDEVDFFSNDKSEQQQQQQLDDHVSIKKTNNNQIYDPHCNLRAHHVNTGLQLLITNTGSDQSMMDDRTSINAQDNKRAKTQQTDQLQEELGRVNAENQKLKDMLSDMNSSYTNLHNRFISLMQQQQNQTTEHDHIVNGKAVEKGDGVVARKFMNGPAAEVDDQQEPEPCTPQNNHKEPDPDASELVQLLDRSQLPRLNPSNAADQANAEATMRKARVSVRARSEAHMINDGCQWRKYGQKMAKGNPCPRAYYRCTMALGCPVRKQVQRCAEDRSILITTYEGTHSHPLPPAAMPMASTTAAAATVLLSGSMSSADGVMNPNLLARILPNCSSSMATLSASAPFPTVTLDLTRDTTDNNGNSPSQFQLGQPQNFGSGQLPQVIAQALYNQSKFSGLQMSQDVGGSSQLHPTQQASSLSAAITADPNFTAALAAAISSIIGAAPPSNNNSNPNIINSATYNQ* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4940 498 SUPERFAMILY WRKY DNA-binding domain 259 327 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g4940 498 SMART WRKY_cls 266 326 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g4940 498 MobiDBLite consensus disorder prediction 15 34 - -
Mtr4g4940 498 PANTHER WRKY TRANSCRIPTION FACTOR 31-RELATED 33 490 - -
Mtr4g4940 498 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 33 490 IPR044810 GO:0003700
Mtr4g4940 498 Gene3D WRKY domain 251 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g4940 498 Coils Coil 114 141 - -
Mtr4g4940 498 MobiDBLite consensus disorder prediction 195 219 - -
Mtr4g4940 498 ProSiteProfiles WRKY domain profile. 261 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g4940 498 MobiDBLite consensus disorder prediction 477 498 - -
Mtr4g4940 498 Pfam WRKY DNA -binding domain 267 325 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4940 Mtr-Chr4 63541489 63543915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4940 10 476 WRKY Transcription Factor Family AT1G62300 50.000 9.24e-122 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr4g4940 WRKY 3.9e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4940 - - mtr:MTR_4g132430 923.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4940 4 63541489 63543915 Mtr4g4940 4 63541489 63543915 ECH
Mtr2g0842 2 8526807 8529598 Mtr4g4940 4 63541489 63543915 ECH
Mtr2g2955 2 43155615 43159333 Mtr4g4940 4 63541489 63543915 ECH
Mtr4g1458 4 25899531 25903066 Mtr4g4940 4 63541489 63543915 ECH