Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4916 ATGATGCAACCAGGAGGACCAGGTATGCCACCACCCAACTTGGCTCAACAATTTCATCAACAAGTACAACAGCAACATCAACAACAACCACCCTACATGATGATGCATCCTCCTCAGCCTCAACCTCAACCACAAACTCAACCTCCTCAGATGTGGGCCCCTAACGCCCAGCCTCCTCAACAATCGGCGGTTCCTCCTCCTTCCAGCGCCGATGAAGTCAAAACTCTCTGGATCGGTGATTTGCAATATTGGATGGACGAGAATTATCTTTATAACTGTTTCTCTCACACCGGCGAGGTTGGATCTGTTAAAGTTATTCGTAATAAGCAGACTAATCAATCTGAAGGTTATGGGTTTCTTGAGTTTATTAGCCGTGCTGGTGCTGAGAGAGTACTTCAAACATTTAATGGCACCATTATGCCAAATGGTGGCCAGAATTTCAGATTGAACTGGGCAACTTTTAGTTCTGGTGAGAAGCGTCATGATGATTCTCCGGACTACACCATATTTGTTGGTGACTTGGCTGCTGATGTTTCTGATCATCATTTGACGGAAGTGTTTAGAACTCGGTATAATTCAGTTAAGGGTGCCAAAGTTGTAATCGACAGGACCACTGGTAGGACAAAAGGTTATGGTTTTGTTAGGTTTGCTGATGAGAGTGAACAAATGAGGGCTATGACTGAAATGCAAGGGGTTCTTTGTTCCACAAGACCCATGCGTATTGGACCAGCCTCTAACAAAAACCTTGGCACACAGACTTCAAAAGCTTCTTATCAGAATCCACAAGGAGGGGCACAGAACGAGAATGATCCAAATAATACAACCATTTTTGTTGGCAATTTGGATCCTAATGTCACAGATGAACATTTGAAACAAGTTTTTACCCAGTATGGTGAACTGGTTCATGTTAAGATTCCATCAGGCAAGAGATGTGGGTTTGTCCAATTTGCAGACAGGAGTTCTGCTGAGGAGGCACTACGGGTTTTAAATGGTACACTTCTAGGTGGTCAAAATGTCCGGCTTTCATGGGGCCGAAGCCCGGCAAACAAGCAGACTCAACAAGATCCAAACCAGTGGAATGGTAGTAGCAGTTACTTCGGCGGTTATGCCCAAGGTTATGAAAATTATGCTTATGCCCCTCCTGCTGGACAAGACCCAAATATGTATGGCAGTTATCCGGCGGGGTATGCAAGTTACCAACCTCCTCAGCAGCAACAGCAATTAGGATATAGTTAA 1236 0.4466 MMQPGGPGMPPPNLAQQFHQQVQQQHQQQPPYMMMHPPQPQPQPQTQPPQMWAPNAQPPQQSAVPPPSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRAGAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASNKNLGTQTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVTDEHLKQVFTQYGELVHVKIPSGKRCGFVQFADRSSAEEALRVLNGTLLGGQNVRLSWGRSPANKQTQQDPNQWNGSSSYFGGYAQGYENYAYAPPAGQDPNMYGSYPAGYASYQPPQQQQQLGYS* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4916 411 CDD RRM1_SECp43_like 75 155 - -
Mtr4g4916 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 274 346 IPR000504 GO:0003723
Mtr4g4916 411 MobiDBLite consensus disorder prediction 243 275 - -
Mtr4g4916 411 SUPERFAMILY RNA-binding domain, RBD 35 155 IPR035979 GO:0003676
Mtr4g4916 411 CDD RRM3_NGR1_NAM8_like 273 344 - -
Mtr4g4916 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 74 154 IPR000504 GO:0003723
Mtr4g4916 411 SUPERFAMILY RNA-binding domain, RBD 160 264 IPR035979 GO:0003676
Mtr4g4916 411 MobiDBLite consensus disorder prediction 14 32 - -
Mtr4g4916 411 Gene3D - 73 153 IPR012677 -
Mtr4g4916 411 SMART rrm1_1 168 242 IPR000504 GO:0003723
Mtr4g4916 411 SMART rrm1_1 75 150 IPR000504 GO:0003723
Mtr4g4916 411 SMART rrm1_1 275 342 IPR000504 GO:0003723
Mtr4g4916 411 MobiDBLite consensus disorder prediction 33 65 - -
Mtr4g4916 411 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 22 408 - -
Mtr4g4916 411 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 246 IPR000504 GO:0003723
Mtr4g4916 411 MobiDBLite consensus disorder prediction 344 363 - -
Mtr4g4916 411 MobiDBLite consensus disorder prediction 397 411 - -
Mtr4g4916 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 76 141 IPR000504 GO:0003723
Mtr4g4916 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 276 339 IPR000504 GO:0003723
Mtr4g4916 411 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 169 232 IPR000504 GO:0003723
Mtr4g4916 411 SUPERFAMILY RNA-binding domain, RBD 261 373 IPR035979 GO:0003676
Mtr4g4916 411 CDD RRM2_SECp43_like 166 245 - -
Mtr4g4916 411 Gene3D - 250 355 IPR012677 -
Mtr4g4916 411 Gene3D - 166 242 IPR012677 -
Mtr4g4916 411 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 408 - -
Mtr4g4916 411 MobiDBLite consensus disorder prediction 389 411 - -
Mtr4g4916 411 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4916 Mtr-Chr4 63288290 63292564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4916 73 353 Eukaryotic Initiation Factors Gene Family AT2G23350 27.273 1.44e-28 116