Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4900 ATGGACACTCGAACTCTATCAGTCTCACATCTTCTTCTTCCTCTTCGTGTTCTTCCTTCATCTCAAAACCAAACCTTTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCTACTAACATTAACCACCACCGCGTCACAACAACAACAACAACTCCACTAGCCATTGCCAATCCTACTTCTGCCATCATTCCTCCTACTGCAGACGATGATACAGTCCCCATCACTCTCAGACAATTATGTCAATCTCATGTTCCCGACCAATTACTCCAAAGGATGGAAGAAGTTGGATATGTCATGCCTACACCGGTCCAGAAACAAGCATTGCCTCGTCTTTTCTCAGGCCGTGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTGCATACTTGCTATTGATCTATTCCATCATCAGCACTAGAAAATCTTCTTTTCAAGCACTGGTTTTGGTGCCAACCCGTGAACTTGGCATGCAAGTTACCAAGGTTGCTAGGATACTGGCGGCAAAGCCAACAGGAGTTGAAGGGGAGCAGAGATCATGTACCATCATGGCTCTGTTAGATGGAGGAACATTGAGAAGGCACAAGAGTTGGTTTAAGGCTGAGCCTCCAGCAATAGTAGTTGCAACAGTGGAGAGTTTGTGCCAAATGCTTGAAAGACAACTTTTTTCGCTTGGAAACTTGCGGGTGTTGGTTGTTGATGAGGTTGACTTCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTCCGGAAGATTTTGACCTCATATTCGTCTTGTAATAACCGTCAGACAGTTTTTGCCAGTGCATCTATACCACAGCACAATCAATTTCTTAACGAAGCTGTGCAGCAGAAATGGACTAAGAGGGATGTGATCCATATTCACGTTAGTCCGGTGGAGCCCATGCCGTCTCGTCTATCTCATAGATTTATAGTATGTGATATAAAAAGAAAACTACAAACCCTGTTATCCTTGATACAATCCGATGCTCCCGAGTCTGGCATTATATTTGTTAGTGAGCAGTCTGAGAAGTCGAAAAAGGCTGGTAATTCTCCATCCACGTCCCTTGTGATTGACTTTCTAAAAACATCATATCATGGTTCTTTAGATATCCTCCTCCTCGAAGATGACATGAATTTCAATTCACGAGCAGCTTCTCTGTTGGAGGTTAGGAAAGGTGGCGGCTATCTTCTAGTAGCAACAGATGTAGCAGCTAGAGGAGTTGACTTTCCAGAAATGACTCACATATACAACTATGATCTGCCAAAAACTGCCATAGATTATCTTCATCGAGCAGGGAGGACCTGTAGAAAACCCTTTTCTGATGTGAATTGTACTGTCACCAGCATTATAGTCTCGCAGGAGCGGTTTGTTCTGCAGAGATATGAAAATGAGTTGAGTTTTGTCTGTACAGAGCTTATTCCATAA 1443 0.4283 MDTRTLSVSHLLLPLRVLPSSQNQTFSFSSSSSSSSSSSSSTNINHHRVTTTTTTPLAIANPTSAIIPPTADDDTVPITLRQLCQSHVPDQLLQRMEEVGYVMPTPVQKQALPRLFSGRDCILHAQTGSGKTLAYLLLIYSIISTRKSSFQALVLVPTRELGMQVTKVARILAAKPTGVEGEQRSCTIMALLDGGTLRRHKSWFKAEPPAIVVATVESLCQMLERQLFSLGNLRVLVVDEVDFIFNSSKQVSSLRKILTSYSSCNNRQTVFASASIPQHNQFLNEAVQQKWTKRDVIHIHVSPVEPMPSRLSHRFIVCDIKRKLQTLLSLIQSDAPESGIIFVSEQSEKSKKAGNSPSTSLVIDFLKTSYHGSLDILLLEDDMNFNSRAASLLEVRKGGGYLLVATDVAARGVDFPEMTHIYNYDLPKTAIDYLHRAGRTCRKPFSDVNCTVTSIIVSQERFVLQRYENELSFVCTELIP* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4900 480 CDD DEADc 92 278 - -
Mtr4g4900 480 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 112 294 IPR014001 -
Mtr4g4900 480 SMART ultradead3 100 314 IPR014001 -
Mtr4g4900 480 Gene3D - 24 296 IPR027417 -
Mtr4g4900 480 Pfam Helicase conserved C-terminal domain 323 442 IPR001650 -
Mtr4g4900 480 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 446 IPR027417 -
Mtr4g4900 480 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 479 - -
Mtr4g4900 480 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 480 IPR001650 -
Mtr4g4900 480 SMART helicmild6 360 444 IPR001650 -
Mtr4g4900 480 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 81 109 IPR014014 GO:0003724
Mtr4g4900 480 CDD SF2_C_DEAD 311 442 - -
Mtr4g4900 480 Pfam DEAD/DEAH box helicase 105 278 IPR011545 GO:0003676|GO:0005524
Mtr4g4900 480 MobiDBLite consensus disorder prediction 23 55 - -
Mtr4g4900 480 Gene3D - 307 476 IPR027417 -
Mtr4g4900 480 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 27 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4900 Mtr-Chr4 63140105 63145622 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4900 89 480 Eukaryotic Initiation Factors Gene Family AT1G72730 26.933 4.35e-27 111