Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4893 ATGGATTCATGGAATTTTACTATTTTGGAGACCCCTCCTAGTGAGCTCAATAGTCTCTTCTTTGATGACATCTCTGGAGCTTGTATGCCTATAAATGTTCGTTTCATGATGGTTGTGGTTGTGGAGGATAGTTTCGGTGTTGTCAATGTTTTAGGAGAAGGTTTTCCGGCGGGTATGCGTGTTCTGGCAGTTGATGACGATCCAACTTATCTCAAAGTGCTGGAGAAGCAACTTCTCACATGCAACTATAATGTTACTACAACTACGAAACCTGTGGAAGCGCTAGAATTGTTGAGAGAAAAGAAGGATATGTTTGACCTAGTAATTAGTGATGTTAGCATGCCAGACATGGATGGCTTCAAGCTCCTTGAGCAAGTTGGACTTGAAATGGATTTACCTTTCATCATGTTGTCAGTAAATGATGATATAGAGAAGGTGATGAAGAGTGTTATACACGGTGCTTGCAACTATCTAGTGAAACCGATCCGAATGGAAGAGCTTAAGAGCATATGGCAACATGTAGTTAGAAAGAAGATTGAAAGCAAGGATCAAAATCAAGTTTGGGATCATGAGTTGCATCGAAAATTTGTTTCTGCAGTTAATCATGTCGGCCTTGACAAGGCTTCGCCTAAGAAAATACTTGACTTGATGAATGTTGAAGGACTTACAAGGGAAAATGTATCCAGCCATTTGCAGAGATACAGAATTGATATCAAATGGCTATCTAAACAGGATAGAGGAGATGATGCGTTGGATCCCTACCAGCAAAAGGGTTCAGTAGGTGGATATGGGGATTTTTGCACCTTATCTGGATCAACAAGAGTCCTAAGCAGCATACTGCCAGCATATGCATCCAATGACATGTTTTGTCGGCTGAACGCACCGTCCAGTTTGAACTTGGAAGGAATGAGTTCTTCTGCACTAGTCCCTCCACTTCAGTCTCATAACATTCCCAATTTCGAGACACCAATGTTTTCTGAAAGTGAAAGTTCGAGTTCTGTACATGGCATTCAAACGTCAATGGACATCAACCAGTTTCAGCAGAATATTTATCTGCCTGATAACATTAATTTAAGTCCAATTGATGATTCAAATGCAGTTACAGATTCCTCTAGCTTCCAAGACATCGGAGCCACTGTCAATAATGCAAATGTTTCTCTTTCTTGCATCTCAAGCAATCACATACAAACACATAAATCAGGAGCATTTATCAATCACTCTCATGTTGAAGGTGCTGCTGTGAAAACACAATCTTTTAACCCCGTCACAAGTGGTTCCTCTAACTTTGCTTCCAATTCTGTTCCATTGAGTGAGGATTTTAACAATGATCAAATGTTGCACAATAACTTTAAGTTTGCTTCTCCCAGTTCTCATTTTTCTTCGACAGACATTGTTGCTGTTCCTTTGGAGGAAACAATGCAATGTCAAGATGGCTTACTTGGGAATGTTATAAATGCTCCATGGTACACACAACATCAAAATGCGAGTTCTTCCTTCAACAATACCTTGGATTATCTTGCTTCTTCTAATGGAGACACTAGTTCCATGGTACATGGTTTAGCTCAAACTAATAGTTCATTAATCACTCAGATGCCTGAAGTTGAGAAATTTTATTCAGATGAAAGAACTATGGAATCAAACGGTGATTGCTTTTATGAGCAATTGCTTTCTCTAGATGGATTCATTCAGAATAGTTGTGTGCCTTGGATGACACAATAA 1719 0.395 MDSWNFTILETPPSELNSLFFDDISGACMPINVRFMMVVVVEDSFGVVNVLGEGFPAGMRVLAVDDDPTYLKVLEKQLLTCNYNVTTTTKPVEALELLREKKDMFDLVISDVSMPDMDGFKLLEQVGLEMDLPFIMLSVNDDIEKVMKSVIHGACNYLVKPIRMEELKSIWQHVVRKKIESKDQNQVWDHELHRKFVSAVNHVGLDKASPKKILDLMNVEGLTRENVSSHLQRYRIDIKWLSKQDRGDDALDPYQQKGSVGGYGDFCTLSGSTRVLSSILPAYASNDMFCRLNAPSSLNLEGMSSSALVPPLQSHNIPNFETPMFSESESSSSVHGIQTSMDINQFQQNIYLPDNINLSPIDDSNAVTDSSSFQDIGATVNNANVSLSCISSNHIQTHKSGAFINHSHVEGAAVKTQSFNPVTSGSSNFASNSVPLSEDFNNDQMLHNNFKFASPSSHFSSTDIVAVPLEETMQCQDGLLGNVINAPWYTQHQNASSSFNNTLDYLASSNGDTSSMVHGLAQTNSSLITQMPEVEKFYSDERTMESNGDCFYEQLLSLDGFIQNSCVPWMTQ* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4893 572 Gene3D - 182 241 - -
Mtr4g4893 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 186 IPR045279 GO:0009736
Mtr4g4893 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 187 569 IPR045279 GO:0009736
Mtr4g4893 572 PIRSF RR_ARR_type-B 182 565 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mtr4g4893 572 PIRSF RR_ARR_type-B 41 187 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mtr4g4893 572 Pfam Response regulator receiver domain 61 169 IPR001789 GO:0000160
Mtr4g4893 572 SUPERFAMILY CheY-like 58 187 IPR011006 -
Mtr4g4893 572 Gene3D - 56 181 - -
Mtr4g4893 572 ProSiteProfiles Response regulatory domain profile. 60 175 IPR001789 GO:0000160
Mtr4g4893 572 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 188 239 IPR017930 -
Mtr4g4893 572 SUPERFAMILY Homeodomain-like 182 239 IPR009057 -
Mtr4g4893 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 40 186 - -
Mtr4g4893 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 187 569 - -
Mtr4g4893 572 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 185 236 IPR006447 GO:0003677
Mtr4g4893 572 CDD REC_typeB_ARR-like 61 175 - -
Mtr4g4893 572 SMART REC_2 59 171 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4893 Mtr-Chr4 63080667 63085324 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4893 55 357 Response Regulator Gene Family AT2G25180 41.444 3.85e-76 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr4g4893 Response_reg 1.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4893 - K14491 mtr:MTR_4g131580 681.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4893 4 63080667 63085324 Mtr4g4893 4 63080667 63085324 ECH