Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4890 ATGGCTGTGGAGAATCCTTTGGAGGTTGAAAATGTCTTCAGAGAAGATTTTCCGGTGGGTATGCGTGTTCTGGCTGTTGATGACGATCAAACTTGTCTCAAACTGTTGGAGAAGTTTCTTCTTATGTGCAAGTATAATGTTACTACAACTACGAAACCTGTGGAAGCGCTAGAATTGTTGAGGGAAAAAAGAGATATGTTTGACCTTGTAATTAGTGATGTAAGCATGCCAGAAATGGATGGATTCAAGCTCCTTGAGCAAGTTGGACTTGAAATAGACCTACCCTTCATCATGTTGTCAGGAAATGATGATAGAGAGAGGGTGATGAAAGGTGTGATGAAAGGCGCTTGCGACTATCTAGTGAAACCAATCCGATTGGAAGAGCTTAAGAACATATGGCAACATGTAGTGAGAAAGAAGATTGAAAGCAAGGATCGGAATAAAGTTTGGGATGATGAACTGCATAAAAAATTTGTATCTATAGTTAGTCAACTCGGCCTTGATAAGGCTTATCCTAAGAAGATATGTGACTTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTAGCTAGCCATTTGCAGAAATACAAACTTAGTCTCAAAAGACCATCTAAACAGGCTAGAGTAGATGCTGCATTAGATCCTCACCTACAAAAGAATTCAGTAGCTGGATATGGAGATTTTTGTACCTTACCTGGATCAAGAAGAATCTTAAGCAGCACATTGCCAACATATGCATCTAGTAACATGTTTTGTCGGTTGAACGCACCATCTGGCTTGAACTTGAGAGGAATGAGTTCTTCTGCACTAGTCCCTCCACTTCAGTCTCAAAACATTCCCAGTTACAAGCAGCCATTGTTTTTTGCAAGTGAAAGCTCGAGTGCTTTAAAGGGTGTTCGAACGTCAGTGGAAATTAACCAATTTCAGCAGAACATTTACCCACCTGGTAACATGAAATTAAGTCCAATTGATGATTCAAGTGCATTTACAGATTCTTCTGGCTTCCAAGACATCAGAGCTAATGTTAATAATGCAAATAGTTTTCTTTCTTGCATCTCAAGCAATCACCTACAAACACATAATTCAAGAGCATTCATAAATCACCCATCTGTTGGAGGTCCTGCTATGGAACAAAAATCTTTTAACCCTGCTACAAGTGGTTCCTATAACTTTGCTTCCAATCCTTCTCCATTGAGTGAGGATTTTAATAATGATCAAATATCTCACAATAGCTTAAAGTTTGCCTCACTCAGTTCTCAATTTAAGAAAAATCCAGATGATTTTTCTTCGATACGCGTCATTGATGTTCCTTTAGAGGAAACGATGCAATGTCAAGATGGATTACTTGGGAGTGTTGTAACGGCTTCATGTTACACGCATCAGCAAAATGTGGGTTCTTCCTTCAACAATACCTTGGATTCTTCTAATGCAGACACAAGTTCCATGGTCCATAGTGTACCCCAAACTATTAGTCCATTAATCACTCAGATGCCTGTAGTTGAAAAATTCTATTCAGACGAAAGAACTATGGAATCAAATGGTGATTGCTTTTTTGAGCAATTGCTTGATGTAGATGGATTCGTTCAGAATAGTTCTTTGCCTTGGATGACACAATAA 1617 0.3884 MAVENPLEVENVFREDFPVGMRVLAVDDDQTCLKLLEKFLLMCKYNVTTTTKPVEALELLREKRDMFDLVISDVSMPEMDGFKLLEQVGLEIDLPFIMLSGNDDRERVMKGVMKGACDYLVKPIRLEELKNIWQHVVRKKIESKDRNKVWDDELHKKFVSIVSQLGLDKAYPKKICDLMNVEGLTRENVASHLQKYKLSLKRPSKQARVDAALDPHLQKNSVAGYGDFCTLPGSRRILSSTLPTYASSNMFCRLNAPSGLNLRGMSSSALVPPLQSQNIPSYKQPLFFASESSSALKGVRTSVEINQFQQNIYPPGNMKLSPIDDSSAFTDSSGFQDIRANVNNANSFLSCISSNHLQTHNSRAFINHPSVGGPAMEQKSFNPATSGSYNFASNPSPLSEDFNNDQISHNSLKFASLSSQFKKNPDDFSSIRVIDVPLEETMQCQDGLLGSVVTASCYTHQQNVGSSFNNTLDSSNADTSSMVHSVPQTISPLITQMPVVEKFYSDERTMESNGDCFFEQLLDVDGFVQNSSLPWMTQ* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4890 538 CDD REC_typeB_ARR-like 23 137 - -
Mtr4g4890 538 Pfam Response regulator receiver domain 23 131 IPR001789 GO:0000160
Mtr4g4890 538 PIRSF RR_ARR_type-B 147 518 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mtr4g4890 538 PIRSF RR_ARR_type-B 3 149 IPR017053 GO:0003677|GO:0003700|GO:0009736
Mtr4g4890 538 Gene3D - 144 202 - -
Mtr4g4890 538 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 148 198 IPR006447 GO:0003677
Mtr4g4890 538 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 148 - -
Mtr4g4890 538 PANTHER TWO-COMPONENT RESPONSE REGULATOR 149 535 - -
Mtr4g4890 538 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 148 IPR045279 GO:0009736
Mtr4g4890 538 PANTHER TWO-COMPONENT RESPONSE REGULATOR 149 535 IPR045279 GO:0009736
Mtr4g4890 538 Gene3D - 19 143 - -
Mtr4g4890 538 Pfam Myb-like DNA-binding domain 149 197 IPR001005 -
Mtr4g4890 538 SMART REC_2 21 133 IPR001789 GO:0000160
Mtr4g4890 538 SUPERFAMILY CheY-like 20 146 IPR011006 -
Mtr4g4890 538 SUPERFAMILY Homeodomain-like 144 202 IPR009057 -
Mtr4g4890 538 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4890 Mtr-Chr4 63064533 63067966 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4890 1 311 Response Regulator Gene Family AT2G25180 44.947 7.59e-86 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mtr4g4890 Response_reg 2.6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4890 - K14491 mtr:MTR_4g131580 776.933