Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4888 ATGGTTGCTAATATCTGGTCCGATGATAACAGTCAACAACTCGAAGCAACTACGGAATTTCGGAAGCGTCTTTCCATCGAACGCTATCCTCCGATCGATGAAGTTATTCAATCTGGTGTTGTTCCTCGTTTTGTTCAATTTCTATATAGGGAGGATTTTCCTCAACTTCAGTTTGAGGCTGCTTGGGCACTCACAAACATAGCATCTGGAACTTCGGAGAACACTAAGGTGGTAATTGATCATGGGGCAGTACCAATATTTATCAAGCTACTTAGTTCACCAAGTGATGCTGTTCGGGCACAGGCTCCGTGGGCATTGGGAAACATTGCTGGTGATTCCCCTAGGTGTCGTGATCTTGTTCTCAGTCATGGTGCCCTGATCCCGCTGTTATCCCAGTTGAATGACCAAACAGAGCTTTATATATTGAGAAATGCCATTTGGACCTTGTCAAACTTTTGCAGGGGCAAGCCACAACCCCCACTTGAGCAGATGAGGCCAGCGCTTCCCGCTCTCAAGCATTTGGTTTTTTCCAAAGACGAAGAAGTCCTAACCGATGCATGGTGGGCACTCTCGTATCTTTCTGATGGAACAAATGACAATATCCAAGCGGTGATCGAGGCAGGTGTATGTGGCAGACTGGTGCAGCTCCTTCTGCACCCATCTCCTTCAGTGCTGATTCCTGTCGTTCGCACAATGGGAAATATTGTAACTGGAGACAATATGCAGACTCAGGCTATTATCAATCATGGTTCACTCCCATGCCTTTTGAGCCTGTTGACCAGTAGTCACAAGAAAAGTATTAAGAAAGAAGTTTGCTGGACTGTGTCAAACATTACAGCTGGAAACAGAGAGCAGATACAGGCTGTCATTGAAGCTGGTTTGATTGCTCCCCTAGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAAGAAGCTGCATGGGCACTCACTAATGCTACATCAGGTGGTACCCACGAGCAAATCAAGTACTTGGTTAGCCAGGGTTGCATTAAGCCTCTGTGTGATTTGATGGTTTGCCCTGATCCAAGAATTGTTACTGTCTGTCTAGAAGGTCTTGAGAATATTCTGAAGGTTGGAGAAGTGGAGAAAAGCTTTGGTAACACGGGAGATGTCAACTTGTATGCTCAGATGATAGAGGATGCTGAGGGATTGGAAAAGATTGATAACATGCAGAATCATGACAACTATGAAATTTATGAGAAGGCTGTTAAAATTCTTGAGACATATTGGTTGGAAGATGAAGACGAGACACTAACTTCATGGTGTCTGGTCTAG 1299 0.4434 MVANIWSDDNSQQLEATTEFRKRLSIERYPPIDEVIQSGVVPRFVQFLYREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFIKLLSSPSDAVRAQAPWALGNIAGDSPRCRDLVLSHGALIPLLSQLNDQTELYILRNAIWTLSNFCRGKPQPPLEQMRPALPALKHLVFSKDEEVLTDAWWALSYLSDGTNDNIQAVIEAGVCGRLVQLLLHPSPSVLIPVVRTMGNIVTGDNMQTQAIINHGSLPCLLSLLTSSHKKSIKKEVCWTVSNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWALTNATSGGTHEQIKYLVSQGCIKPLCDLMVCPDPRIVTVCLEGLENILKVGEVEKSFGNTGDVNLYAQMIEDAEGLEKIDNMQNHDNYEIYEKAVKILETYWLEDEDETLTSWCLV* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4888 432 Pfam Atypical Arm repeat 380 424 IPR032413 -
Mtr4g4888 432 SMART arm_5 71 111 IPR000225 GO:0005515
Mtr4g4888 432 SMART arm_5 197 237 IPR000225 GO:0005515
Mtr4g4888 432 SMART arm_5 157 195 IPR000225 GO:0005515
Mtr4g4888 432 SMART arm_5 112 154 IPR000225 GO:0005515
Mtr4g4888 432 SMART arm_5 239 280 IPR000225 GO:0005515
Mtr4g4888 432 SMART arm_5 28 69 IPR000225 GO:0005515
Mtr4g4888 432 SMART arm_5 282 322 IPR000225 GO:0005515
Mtr4g4888 432 SMART arm_5 325 365 IPR000225 GO:0005515
Mtr4g4888 432 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 250 293 IPR000225 GO:0005515
Mtr4g4888 432 PANTHER IMPORTIN ALPHA 1 426 - -
Mtr4g4888 432 SUPERFAMILY ARM repeat 2 424 IPR016024 -
Mtr4g4888 432 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 82 124 IPR000225 GO:0005515
Mtr4g4888 432 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 39 82 IPR000225 GO:0005515
Mtr4g4888 432 PANTHER IMPORTIN SUBUNIT ALPHA 1 426 - -
Mtr4g4888 432 Gene3D - 1 419 IPR011989 -
Mtr4g4888 432 Pfam Armadillo/beta-catenin-like repeat 113 154 IPR000225 GO:0005515
Mtr4g4888 432 Pfam Armadillo/beta-catenin-like repeat 326 363 IPR000225 GO:0005515
Mtr4g4888 432 Pfam Armadillo/beta-catenin-like repeat 239 280 IPR000225 GO:0005515
Mtr4g4888 432 Pfam Armadillo/beta-catenin-like repeat 167 194 IPR000225 GO:0005515
Mtr4g4888 432 Pfam Armadillo/beta-catenin-like repeat 71 110 IPR000225 GO:0005515
Mtr4g4888 432 Pfam Armadillo/beta-catenin-like repeat 30 69 IPR000225 GO:0005515
Mtr4g4888 432 Pfam Armadillo/beta-catenin-like repeat 197 236 IPR000225 GO:0005515
Mtr4g4888 432 Pfam Armadillo/beta-catenin-like repeat 282 321 IPR000225 GO:0005515
Mtr4g4888 432 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 293 321 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4888 Mtr-Chr4 63037049 63040489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4888 54 317 U-box Gene Family AT3G46510 22.642 5.13e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4888 K15042 - gmx:100808498 741.11