Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4881 ATGTCTATTAGAAAACCTCCACCCCCTCGTCTCCTCCTTAACAATGTCTCTTGCATGAGAAATGCCTCGCAAGTTCTGTCCAATGTGAATGTCTCTCTTCATGATGGAGGGGCACTTGTGCTAACAGGCGCAAATGGCTCAGGAAAGTCCACTTTCATGCGCATGTTAGCTGGGTTTTCTCGTCCTTCTGCAGGAGAAATCCTTTGGAATGGCCATGACATTCAAAAATCTACAATCTTCCATCAGTATAAGCTTCAGCTTAACTGGGTCTGCCTCAAGCATGGAATTAATGAGAAGTCTACTGTTCTGGACAATGTTGAGTTGTTTGAACTTCTTGATTACAAGCGAGGGAAGGCTAAGCTTGCACTTCAGTTGATGGGACTGGGAAGATTGGCTAAGGAAAAGCCAAAGATGCTTTCAATGGGCCAGCGGAAAAGATTGCAACTTGCCAGATTGCTCGCAATTGATCGCCCCATATGGTTGCTAGACGAGCCTTCAGTTGCATTAGATGATGAAGGTGTAAAGTTACTTGAGTACATTATTGCAGAACACAGGAAACAGGGAGGAATTGTGATTGTGGCGACTCATTTACCCATTGAGATAGAAGATGCCATGCTCTTGAGGCTGCCACCAAGGTTTCCAAGGAGGATGACACTTATAGATATGCTTGACCGGGCAGATATTAGTTAA 690 0.4464 MSIRKPPPPRLLLNNVSCMRNASQVLSNVNVSLHDGGALVLTGANGSGKSTFMRMLAGFSRPSAGEILWNGHDIQKSTIFHQYKLQLNWVCLKHGINEKSTVLDNVELFELLDYKRGKAKLALQLMGLGRLAKEKPKMLSMGQRKRLQLARLLAIDRPIWLLDEPSVALDDEGVKLLEYIIAEHRKQGGIVIVATHLPIEIEDAMLLRLPPRFPRRMTLIDMLDRADIS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4881 229 TIGRFAM ccmA: heme ABC exporter, ATP-binding protein CcmA 13 209 IPR005895 GO:0017004|GO:0022857
Mtr4g4881 229 SMART AAA_5 35 223 IPR003593 -
Mtr4g4881 229 Pfam ABC transporter 26 166 IPR003439 GO:0005524
Mtr4g4881 229 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 11 228 IPR003439 GO:0005524
Mtr4g4881 229 PANTHER ABC TRANSPORTER I FAMILY MEMBER 1 8 223 IPR005895 GO:0017004|GO:0022857
Mtr4g4881 229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 201 IPR027417 -
Mtr4g4881 229 Gene3D - 7 207 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4881 Mtr-Chr4 62960583 62963121 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4881 24 207 Calmodulin-binding Proteins AT2G36910 26.866 1.58e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4881 - - gmx:100796586 373.244