Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4874 ATGGCTGCTACTGGAGTGCTTGCCGAGATTTTAGACGGAGATGTATACAAATATTATGCTGATGGAGAATGGAAGAAATCTACCTCTGGAAAAAGTGTTGCTATCATCAACCCTACTACAAGAAAGCCTCAATACAAAGTTCAAGCTTGTTCACAAGAGGAAGTTAATAAGGTTATGGATTCAGCAAAAGCAGCACAAAAGTCATGGGCAAAGACTCCACTTTGGAAGAGGGCTGAACTTCTTCACAAGGCAGCTGCAATCCTCAAAGAACACAAAGCTGCAATTGCAGAATGCTTAGTCAAAGAAATAGCAAAGCCAGCGAAAGATGCAGTTACAGAGGTTGTAAGATCTGGTGATTTGGTTTCTTACTGTGCTGAAGAAGGAGTAAGGATTCTTGGAGAGGGAAAGTTTCTGGTTTCAGATAGCTTTCCGGGAAATGAAAGGACCAAATATTGCCTCACTTCCAAGATCCCATTAGGAGTGATCTTAGCCATTCCACCTTTTAACTATCCTGTCAATCTTGCTGTCTCAAAAATTGCTCCTGCACTCATTGCTGGAAATTCTATTGTGCTCAAGCCTCCAACTCAGGGAGCTGTTGCAGCTCTTCACATGGTTTATTGCTTTCACTTGGCTGGTTTTCCCAAAGGTCTAATCAGCTGTGTTACTGGCAAAGGCTCAGAAATTGGTGACTTCCTTACAATGCATCCAGGAGTGAACTGTATAAGCTTCACTGGTGGAGATACCGGCATTGCAATTTCAAAGAAGGCAGGCATGATTCCGTTACAAATGGAATTGGGAGGAAAAGATGCTTGCATTGTACTTGAAGATGCTGACCTTGATTTGGTTGCTGCAAACATTATAAAAGGAGGTTTTTCATACAGTGGTCAGAGGTGTACTGCTGTTAAGGTTGTCTTGGTAATAGAATCAGTTGCTGATACTTTGGTTGAGAAAGTGAAGGCTAAGGTGGCAAAACTAAGCGTTGGACCACCTGAGGATGACTGTGATATCACCCCAGTTGTATCAGAATCATCAGCTAATTTCATTGAAGGCTTGGTGAATGATGCTAAGCAGAAAGGAGCAACATTCTGCCAAGAATACAAGAGAGAAGGGAATCTTATTTGGCCTTTGTTATTGGATAATGTTAGGCCAGACATGAGAATTGCTTGGGAGGAGCCATTTGGACCAGTTTTGCCTGTAATTAGGATCAATTCTGTTGAAGAAGGCATCCACCATTGTAATGCTAGTAACTTTGGACTTCAGGGATGTGTGTTCACAAAGGATATCAACAAAGCAATGATGATTAGTGATGCAATGGAATCAGGAACAGTTCAGATAAATTCTGCCCCAGCTCGTGGGCCAGATCATTTTCCCTTTCAGGGTATAAAAGACAGTGGAATTGGATCACAAGGAATTACCAACAGCATAAACATGATGACAAAAATCAAAACTACCGTGATAAACTTGCCAAGCCCTTCTTATACCATGGGCTAA 1491 0.4178 MAATGVLAEILDGDVYKYYADGEWKKSTSGKSVAIINPTTRKPQYKVQACSQEEVNKVMDSAKAAQKSWAKTPLWKRAELLHKAAAILKEHKAAIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVAALHMVYCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVIESVADTLVEKVKAKVAKLSVGPPEDDCDITPVVSESSANFIEGLVNDAKQKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAMMISDAMESGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSINMMTKIKTTVINLPSPSYTMG* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4874 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Mtr4g4874 496 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491
Mtr4g4874 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Mtr4g4874 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Mtr4g4874 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Mtr4g4874 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Mtr4g4874 496 PANTHER NADP-DEPENDENT GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 1 496 - -
Mtr4g4874 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Mtr4g4874 496 PANTHER ALDEHYDE DEHYDROGENASE 1 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4874 Mtr-Chr4 62900806 62905253 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4874 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 89.113 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4874 K00131 - gmx:100789100 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4874 4 62900806 62905253 Mtr4g4874 4 62900806 62905253 ECH