Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4873 ATGCAGCCTTGTAGCAGAGAAATGCAATCTCTTAACTCTCTCTTCAACTCTTCTTCTTCTTCTTCTTCTGAAATTCCCATTCCTCTCCAAAGTCAGATCCAAATTAACAACAACAACAACAATCACAACGACACATTCAACCATCACGACGATTTTCTCAAACAAATCCTCTCCACCAATCTTCCTCCTTCATGGAACACTCTCGACCCAAACCATAACAAACCCTTATTATGGGACCCCAATTCCGACGAAAATGTCACTTTCCCTAATTACGATGAACAACACAACAACCTTGCCTCTAAGTTTCGTAACCACCAGATCACTGACAAAACCGCCGCCGCTCTCATGCTTCTCACCGCCGATTCCGGAGGTCTCCTCCACATGCCTGCTGACTTTGACTCCTCCCAAAACGACGTCGTTAACACCTCCTCCGCTGCTGGTGATGCTTCCGTTCAAGCTCTCTTCAACGGTTTCTCCGGATCTCTCCACGGTGTCGCTCAACCTCACCATTTTCAACCTCCACAGGGGCAGAGTTTTGGAAGTGGTTCGGTGAGTGCAACGAACCAAGCTCCGGCAAGTGGCGCTCCGGCTCAGCCGAGACAAAAGGTTAGGGCAAGGAGAGGGCAAGCCACCGACCCACACAGCATCGCCGAAAGGCTACGGAGGGAAAGAATTGCTGAGAGAATGAAAGCTTTGCAGGAACTTGTTCCTAATGCAAACAAGACAGACAAGGCTTCCATGCTGGATGAGATCATCGATTATGTGAAGTTCCTACAAGTCCAAGTCAAAGTTTTGAGTATGAGCAGATTAGGTGGAGCAGGGGCTGTAGCTCCTCTTGTGGCTGATATGTCCTCCGAGGGTGTCAGTGACTGCGTCCAAACAAACGGCAACGGAGGGGTCCACCCACGAAACCCTAAAACGGCGTCGTCCTCCAACGAAAGCCTCACCATGACGGAGCATCAAGTGGCCAAGCTAATGGAAGAAGACATGGGATCTGCCATGCAATACTTACAAGGCAAAGGTCTTTGCCTCATGCCTATTTCTCTTGCTACTGCAATCTCTACTGCCACGTGTCACACCAGGAACCCTTTGATCAATGCTGCTAATAATAACATCAACGGTAGTTCCAACCCTATCACCGCATCTAACGGTGATGGGCCATCTTCTCCCGGAATGTCCGTTAACAGCATCGTCAAAGATGCTAACTCCGCTTCTAAGTCGTAG 1224 0.491 MQPCSREMQSLNSLFNSSSSSSSEIPIPLQSQIQINNNNNNHNDTFNHHDDFLKQILSTNLPPSWNTLDPNHNKPLLWDPNSDENVTFPNYDEQHNNLASKFRNHQITDKTAAALMLLTADSGGLLHMPADFDSSQNDVVNTSSAAGDASVQALFNGFSGSLHGVAQPHHFQPPQGQSFGSGSVSATNQAPASGAPAQPRQKVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQVQVKVLSMSRLGGAGAVAPLVADMSSEGVSDCVQTNGNGGVHPRNPKTASSSNESLTMTEHQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATCHTRNPLINAANNNINGSSNPITASNGDGPSSPGMSVNSIVKDANSASKS* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4873 407 MobiDBLite consensus disorder prediction 165 217 - -
Mtr4g4873 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 258 IPR011598 GO:0046983
Mtr4g4873 407 MobiDBLite consensus disorder prediction 1 25 - -
Mtr4g4873 407 MobiDBLite consensus disorder prediction 171 195 - -
Mtr4g4873 407 Gene3D - 206 271 IPR036638 GO:0046983
Mtr4g4873 407 PANTHER TRANSCRIPTION FACTOR BHLH69 42 367 - -
Mtr4g4873 407 Pfam Helix-loop-helix DNA-binding domain 214 259 IPR011598 GO:0046983
Mtr4g4873 407 MobiDBLite consensus disorder prediction 295 315 - -
Mtr4g4873 407 SMART finulus 215 264 IPR011598 GO:0046983
Mtr4g4873 407 MobiDBLite consensus disorder prediction 369 407 - -
Mtr4g4873 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 42 367 - -
Mtr4g4873 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 268 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4873 Mtr-Chr4 62891607 62895745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4873 195 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 72.973 7.13e-90 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g4873 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4873 - - gmx:100807286 402.519