Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4870 ATGGGTCGTCGCAAAATTGAGATTGAGATCGTGAAAGATCCTAACACGAGGCAGGTCACATTCTCAAAACGTCGAACAGGTTTATTCAAGAAAGCAAATGAGTTGTCCATTTTGTGCGGAGTAGAGATCGCTATTGTTGTGTTTTCTCCTGGGAATCGACCTTACTCTTTTGGTCACCCAGGAATTAATGTTGTTGCTGCCAAGTATCTCCAACAAGAGCCTGAACTAAGTGATTCCCTAGGGAACCCCTCCTCTGATGCACCTGATATAGAGAAACTGAATCTAAAACTTGTTGAGGCCTCCTCTGATGCACCCGGTATAGAAAAATTGAATCTAGAACTTACTGAGGTGTTGACACAAATTCAGGAAGGTGAAAAGCAGAACGAGACCCATGATGAGATTCTAAAGCAAGACAATGTGATGAAACTCTCTGAGCTTAAAGAATTGAGAGATTCGTATAAAGAGCTTCACGATTTGGTGAAATTACGTCTTAGTGATATCGAGATATCAGTATGCATGATGCTTTTAGCTCAGGATCCAGTGGTAGGAATAAAAGAAAAATCTGCAAGAAAGAAAAGAAGAAAAAATTAA 591 0.401 MGRRKIEIEIVKDPNTRQVTFSKRRTGLFKKANELSILCGVEIAIVVFSPGNRPYSFGHPGINVVAAKYLQQEPELSDSLGNPSSDAPDIEKLNLKLVEASSDAPGIEKLNLELTEVLTQIQEGEKQNETHDEILKQDNVMKLSELKELRDSYKELHDLVKLRLSDIEISVCMMLLAQDPVVGIKEKSARKKRRKN* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4870 196 SUPERFAMILY SRF-like 1 72 IPR036879 GO:0003677|GO:0046983
Mtr4g4870 196 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g4870 196 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g4870 196 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr4g4870 196 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mtr4g4870 196 Gene3D - 14 80 IPR036879 GO:0003677|GO:0046983
Mtr4g4870 196 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 188 - -
Mtr4g4870 196 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g4870 196 Coils Coil 107 127 - -
Mtr4g4870 196 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr4g4870 196 PANTHER MADS BOX PROTEIN 2 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4870 Mtr-Chr4 62826350 62827460 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4870 1 178 Type I MADS-box Gene Family AT2G34440 40.541 2.13e-38 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g4870 SRF-TF 7.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4870 - - mtr:MTR_4g131030 367.081