Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4868 ATGGTTGCTGATATCTGGTCCGATGATAACAGCCAACAACTCGAAGCAACTACGGAATTTCGGAAGCGTCTTTCCGTTGACAAACCTCCGATTGATGATGTTATTCAATCTGGTGTTGTTCCCCGTTTTGTTCAATTTCTAGACAAGGGGGATTTTCCTCAACTTCAGCTTGAGGCTGCTTGGGCACTCACAAACATAGCAGCTGGAACTTCTGAGAACACTAAGGTGGTAGTTGATCATGGCGCAGTACCAATGTTTGTCAAGCTTCTTAGTTCACCATGTGACGATGTTCGGGGCCAGGCTGCGTGGGCATTGGGAAACATTGCTGGTGATTCCCCTAGAGGCCGTGATCTTGTTCTCAGTCACGGTGCCCTGATCCTACTTTTATCCCAGCTGAATGAGCAAGAAGGGCTTTATAGGCTGAGAAATGCCGTTTGGACGCTGTCAAACTTTTGCAGGGGCAAGCCACAACCCGCACTTGAGCAGGTGAGGTCAGCGCTTCCCGCTCTCAAGTGTTTGGTTTTTTCCAAAGATGAAGTCGTCCTGACCGAGGCATGTTGGGCACTCTCGTATCTTTCTGATGGAACAAGTGATAATATCCAAGCGGTGATCGAGGCAGGTGTATGTGGTAGACTGGTGCAAATCCTTCTGGAACCATCTCTTTCAGCGCTGTTTCCTGCACTTCGCACAGTGGGAAATATTGTATCTGGAGATGATATGCAGACTCAGGCTATTGTCAATCATGGTTTACTCCCATGTCTTTTGAGCCTGTTGACCCATCCCAAGAAAAGTATTAAGAAAGAAGCTTGCAGGACTTTGTCAAACATTACAGCTGGAAACAGAGAGCAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCCCTAGTCAATCTTCTTCAAAATGCAGAGTTTGACATTACAAAGGAAGTTGCACAGGCACTCACTAATGTTACATCTGGTGGTACCCACGAGCATATCAAGTACTTGGTGAGCCAGGGTTGCATTAAGCCTCTGTGTGATTTGCTAGTTTGCCCTGATCCAAGAATAGTTACTGTTTGTCTAGAAGGTCTTGAGAATTTTCTAAAGGTTGGAGAAGCAGAGAAAAGCATAAGTAACACCGGAGATGTCAACTTGTATGCTCAGACGATAAAGGATGTTGAGGGATTGGAAAAAGGTTTGGAGAAATTTCTGAAGGTTGGAGAAGCAGAGAAAAGATTTGGTAACACGGGAGATGTCAATTTGTATGCTCAGATGATAGAGGATGTTAAGGGATTGGAAAAGATTGAAAACTTGGATAGTCATGAAGACAGAGAAATTTATGAGAAGGCTGCTAAAATTCTCGAGAGATATTGGTTGGAAGATGAAGATGAGACACTAACTTCATGGTGTCTTGTCTAG 1401 0.4468 MVADIWSDDNSQQLEATTEFRKRLSVDKPPIDDVIQSGVVPRFVQFLDKGDFPQLQLEAAWALTNIAAGTSENTKVVVDHGAVPMFVKLLSSPCDDVRGQAAWALGNIAGDSPRGRDLVLSHGALILLLSQLNEQEGLYRLRNAVWTLSNFCRGKPQPALEQVRSALPALKCLVFSKDEVVLTEACWALSYLSDGTSDNIQAVIEAGVCGRLVQILLEPSLSALFPALRTVGNIVSGDDMQTQAIVNHGLLPCLLSLLTHPKKSIKKEACRTLSNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDITKEVAQALTNVTSGGTHEHIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENFLKVGEAEKSISNTGDVNLYAQTIKDVEGLEKGLEKFLKVGEAEKRFGNTGDVNLYAQMIEDVKGLEKIENLDSHEDREIYEKAAKILERYWLEDEDETLTSWCLV* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4868 466 PIRSF Importin_alpha 392 463 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mtr4g4868 466 PIRSF Importin_alpha 1 392 IPR024931 GO:0005737|GO:0006606|GO:0061608
Mtr4g4868 466 SMART arm_5 323 363 IPR000225 GO:0005515
Mtr4g4868 466 SMART arm_5 111 153 IPR000225 GO:0005515
Mtr4g4868 466 SMART arm_5 70 110 IPR000225 GO:0005515
Mtr4g4868 466 SMART arm_5 27 68 IPR000225 GO:0005515
Mtr4g4868 466 SMART arm_5 238 278 IPR000225 GO:0005515
Mtr4g4868 466 SMART arm_5 280 320 IPR000225 GO:0005515
Mtr4g4868 466 SMART arm_5 155 194 IPR000225 GO:0005515
Mtr4g4868 466 SMART arm_5 196 236 IPR000225 GO:0005515
Mtr4g4868 466 PANTHER IMPORTIN SUBUNIT ALPHA 1 392 - -
Mtr4g4868 466 PANTHER IMPORTIN SUBUNIT ALPHA 392 460 - -
Mtr4g4868 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Mtr4g4868 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 291 319 IPR000225 GO:0005515
Mtr4g4868 466 SUPERFAMILY ARM repeat 2 452 IPR016024 -
Mtr4g4868 466 Pfam Armadillo/beta-catenin-like repeat 324 360 IPR000225 GO:0005515
Mtr4g4868 466 Pfam Armadillo/beta-catenin-like repeat 163 193 IPR000225 GO:0005515
Mtr4g4868 466 Pfam Armadillo/beta-catenin-like repeat 28 68 IPR000225 GO:0005515
Mtr4g4868 466 Pfam Armadillo/beta-catenin-like repeat 70 109 IPR000225 GO:0005515
Mtr4g4868 466 Pfam Armadillo/beta-catenin-like repeat 280 319 IPR000225 GO:0005515
Mtr4g4868 466 Pfam Armadillo/beta-catenin-like repeat 239 278 IPR000225 GO:0005515
Mtr4g4868 466 Pfam Armadillo/beta-catenin-like repeat 196 235 IPR000225 GO:0005515
Mtr4g4868 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 38 81 IPR000225 GO:0005515
Mtr4g4868 466 PANTHER IMPORTIN ALPHA 392 460 - -
Mtr4g4868 466 PANTHER IMPORTIN ALPHA 1 392 - -
Mtr4g4868 466 Pfam Atypical Arm repeat 414 458 IPR032413 -
Mtr4g4868 466 Gene3D - 1 392 IPR011989 -
Mtr4g4868 466 Gene3D - 393 453 IPR011989 -
Mtr4g4868 466 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 249 291 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4868 Mtr-Chr4 62802366 62807136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4868 53 319 U-box Gene Family AT3G46510 22.846 6.83e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4868 K15042 - gmx:100808498 674.085