Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4849 ATGCTCTGCAAGTACTACCTCGACCCTACTGCGGTTTCAAGTTTTTGTTCAATGGAGTTCAAATTCCGTGCTATCGATAACATCAATCCATCAACCATGCAGCCTTCTCATCCCACCGTCACATATCTCCCTGACCGATCTCTTCCAATGGACGGTGGTTTTGCTGGCTTCCGAGCACCATTGGCCACCAACGAGGCGGCATTACGACGAGAGATGGAGAAGGAACAAATCCGGCGGGATATGTTGCGGCGGATAGAGTTGGAGGATGAAGTGAGGAGGGAGCTTGCAATGGAGGGGGCGTTTGGAACTATGCAGAAGCCTCTCAATTCTGTGTGGTCAAATTCTACACCGATGATGATGATGAACCCTGTTGCTGTTGATGCTTCACAACCACCTGAAATCAAACATTTTCCACAGACCAGTGACAAGGACAAAGTTATTCTATTGGCTAAGCCAGACCCCGATCTCTATGGTGCAAAGCGAAAAGCATTGACACTTGATGCTCCTAATGATGATCCTTATGCAATTGGTATGAAGAAAAAACCAAAGGAAGAGTGGAGTTGTGAACTGTGCCAAATTAAAGCCACGAGTGAGAGTGGCTTGAATGCTCATCTGAATGGTAAGAAGCACAAGGCCAAGGAAGCAGGACAAAAAAGGAAGATTGACAAGTGCAGCAGGAAAAGTCAAAAAACCGCTGAAAAGATTACTGATACAGTTGTTGTAGAAACAGATCAACAAGCTCCTCAACCTTGCTTAGCCTTGGAAGTCATGGATGAGACTATGGTTGATAAGGGTCTCACAGAATCTAAAAAAGAGGAGCAGCTTGTGGAGACGATGGTTGATAATGGTGTTACCAAATCCAATAATGAGAAGCTTGTGGAGATGATGGCTGATAATGGTGTAAGTATAACAACATCCAAAAATGAGAAGAATCCTGTGGAGATGAAGGCTGATAAGAATGTAACAGAATCTAAAATTGAGGAGCAGCTTGTTGAGATGGTTGCTGATAATGGTGTAAGTATAACAACATCCGAAAATGAGAAGAAGCTTGTGGAGATGAATGCTGATAAGGATATAACAGAATCTAAAATTGAGGAGCAGCTTGTGGAGAAAAGCCAAAAGATAGGTTTTTCCGAGTGTAGAAGTGACGCTGCAACCGATGAAGCATGGAAGGAAAGTGCATTGGCAAAGAGGAGGAAGGTTGGACGTTTATGGTGTGAGCATTGTCAAATTGGCGCTTTCTCACAAGCTGTGATGGAAGACCATATGAAAGGGAAAAAACACCTAAAGAATATGAAGAAACTCCATCAAAATAATGCAAGTCCTACATCAACATCCTCTATATCACAAAAAACACATTTGTTGATCAATGATACAGATGATGTTAACAAAGAAACAGACCAAGTAATGACACTTGTAGGGAAAGGAGAACCAATACTAAAGATGGAAAATAATTTTTGA 1461 0.423 MLCKYYLDPTAVSSFCSMEFKFRAIDNINPSTMQPSHPTVTYLPDRSLPMDGGFAGFRAPLATNEAALRREMEKEQIRRDMLRRIELEDEVRRELAMEGAFGTMQKPLNSVWSNSTPMMMMNPVAVDASQPPEIKHFPQTSDKDKVILLAKPDPDLYGAKRKALTLDAPNDDPYAIGMKKKPKEEWSCELCQIKATSESGLNAHLNGKKHKAKEAGQKRKIDKCSRKSQKTAEKITDTVVVETDQQAPQPCLALEVMDETMVDKGLTESKKEEQLVETMVDNGVTKSNNEKLVEMMADNGVSITTSKNEKNPVEMKADKNVTESKIEEQLVEMVADNGVSITTSENEKKLVEMNADKDITESKIEEQLVEKSQKIGFSECRSDAATDEAWKESALAKRRKVGRLWCEHCQIGAFSQAVMEDHMKGKKHLKNMKKLHQNNASPTSTSSISQKTHLLINDTDDVNKETDQVMTLVGKGEPILKMENNF* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4849 486 Pfam Zinc-finger of C2H2 type 405 428 - -
Mtr4g4849 486 Pfam Zinc-finger of C2H2 type 186 210 - -
Mtr4g4849 486 SMART c2h2final6 186 210 IPR013087 -
Mtr4g4849 486 SMART c2h2final6 404 428 IPR013087 -
Mtr4g4849 486 SUPERFAMILY beta-beta-alpha zinc fingers 170 218 IPR036236 -
Mtr4g4849 486 Gene3D Classic Zinc Finger 386 437 - -
Mtr4g4849 486 Gene3D Classic Zinc Finger 169 217 - -
Mtr4g4849 486 PANTHER OS06G0651300 PROTEIN-RELATED 18 475 - -
Mtr4g4849 486 SUPERFAMILY beta-beta-alpha zinc fingers 399 435 IPR036236 -
Mtr4g4849 486 SMART ZnF_U1_5 183 217 IPR003604 GO:0003676|GO:0008270
Mtr4g4849 486 SMART ZnF_U1_5 401 435 IPR003604 GO:0003676|GO:0008270
Mtr4g4849 486 MobiDBLite consensus disorder prediction 205 229 - -
Mtr4g4849 486 PANTHER OS06G0651300 PROTEIN 18 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4849 Mtr-Chr4 62632688 62637178 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g4849 144 237 C2H2 Transcription Factor Family AT2G19380 35.106 9.48e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4849 - - mtr:MTR_4g130690 959.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4849 4 62632688 62637178 Mtr4g4849 4 62632688 62637178 ECH